[med-svn] [python-pbcore] branch upstream updated (60c0774 -> a06a1f0)

[Afif Elghraoui]

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afif pushed a change to branch upstream
in repository python-pbcore.

      from  60c0774   Imported Upstream version 1.2.9+dfsg
       new  a06a1f0   Imported Upstream version 1.2.10+dfsg

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Summary of changes:
 CHANGELOG.org                          |   5 +
 pbcore/__init__.py                     |   2 +-
 pbcore/chemistry/resources/mapping.xml |  71 ++++++-
 pbcore/io/align/BamAlignment.py        |   2 +-
 pbcore/io/align/PacBioBamIndex.py      |  17 ++
 pbcore/io/dataset/DataSetErrors.py     |  17 ++
 pbcore/io/dataset/DataSetIO.py         | 313 +++++++++++++++++++++--------
 pbcore/io/dataset/DataSetMembers.py    | 185 ++++++++++++------
 pbcore/io/dataset/DataSetReader.py     |  44 ++++-
 pbcore/io/dataset/utils.py             |  81 +++++++-
 requirements.txt                       |   2 +-
 tests/test_pbcore_io_AlnFileReaders.py |  19 ++
 tests/test_pbdataset.py                | 348 ++++++++++++++++++++++++++++++++-
 tests/test_pbdataset_subtypes.py       | 129 +++++++++++-
 14 files changed, 1073 insertions(+), 162 deletions(-)
 create mode 100644 pbcore/io/dataset/DataSetErrors.py

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