[med-svn] [daligner] branch upstream updated (c71ad71 -> 3e9ce55)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch upstream
in repository daligner.

      from  c71ad71   Imported Upstream version 1.0+20151214
       new  3e9ce55   Imported Upstream version 1.0+20160927

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DB.c                    |   86 ++-
 DB.h                    |   28 +-
 HPC.daligner.c          | 1399 +++++++++++++++++++++++++++++++++++++++++++++++
 HPCdaligner.c           |  543 ------------------
 HPCmapper.c             |  591 --------------------
 LAcat.c                 |   53 +-
 LAcheck.c               |   95 +++-
 LAdump.c                |   13 +-
 LAmerge.c               |   58 +-
 LAshow.c                |   78 ++-
 LAsort.c                |   83 ++-
 LAsplit.c               |   51 +-
 LAupgrade.Dec.31.2014.c |  153 ------
 Makefile                |   15 +-
 QV.c                    |   56 +-
 QV.h                    |   18 +-
 README                  |  395 -------------
 README.md               |  506 +++++++++++++++++
 align.c                 |  165 ++++--
 align.h                 |   23 +-
 daligner.c              |  102 +++-
 filter.c                |  348 +++++++-----
 filter.h                |    5 +-
 23 files changed, 2801 insertions(+), 2063 deletions(-)
 create mode 100644 HPC.daligner.c
 delete mode 100644 HPCdaligner.c
 delete mode 100644 HPCmapper.c
 delete mode 100644 LAupgrade.Dec.31.2014.c
 delete mode 100644 README
 create mode 100644 README.md

-- 
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