[med-svn] [dazzdb] branch upstream updated (64be7f2 -> f9c46a1)

[Afif Elghraoui]

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afif pushed a change to branch upstream
in repository dazzdb.

      from  64be7f2   Imported Upstream version 1.0
       new  f9c46a1   Imported Upstream version 1.0+20160930

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Catrack.c                |  57 ++---
 DAM2fasta.c              |  60 ++----
 DB.c                     | 284 ++++++++++++++++++------
 DB.h                     |  78 +++----
 DB2fasta.c               | 108 +++++-----
 DB2quiva.c               |  97 ++++-----
 DBshow.c => DBdump.c     | 504 +++++++++++++++++++++++++++++--------------
 DBdust.c                 |  39 +---
 DBrm.c                   |  37 ----
 DBshow.c                 |  55 +----
 DBsplit.c                |  68 ++----
 DBstats.c                | 178 +++++++--------
 DBupgrade.Dec.31.2014.c  | 115 ----------
 DBupgrade.Sep.25.2014.c  | 125 -----------
 DUSTupgrade.Jan.1.2015.c | 117 ----------
 LICENSE                  |  34 +++
 Makefile                 |  28 ++-
 QV.c                     |  93 ++++----
 QV.h                     |  55 ++---
 README                   | 442 --------------------------------------
 README.md                | 501 +++++++++++++++++++++++++++++++++++++++++++
 fasta2DAM.c              | 477 ++++++++++++++++++++++++++++++-----------
 fasta2DB.c               | 290 +++++++++++++++----------
 quiva2DB.c               | 546 +++++++++++++++++++++++++++++------------------
 rangen.c                 | 182 ++++++++++++++++
 simulator.c              | 473 ++++++++++++++++++++++++----------------
 26 files changed, 2771 insertions(+), 2272 deletions(-)
 copy DBshow.c => DBdump.c (52%)
 delete mode 100644 DBupgrade.Dec.31.2014.c
 delete mode 100644 DBupgrade.Sep.25.2014.c
 delete mode 100644 DUSTupgrade.Jan.1.2015.c
 create mode 100644 LICENSE
 delete mode 100644 README
 create mode 100644 README.md
 create mode 100644 rangen.c

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