[med-svn] [emperor] 05/15: Drop files.zip archive with potential licensing issues and a lot of byteload from the source archive and let tutorial users download it directly from the internet. Once we are removing files we can also remove a code copy of libjs-twitter-bootstrap

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository emperor.

commit 33c856dc4244d3b6b69ac6e97fa36c269173a1ac
Author: Andreas Tille <tille at debian.org>
Date:   Tue Feb 25 15:04:55 2014 +0000

    Drop files.zip archive with potential licensing issues and a lot of byteload from the source archive and let tutorial users download it directly from the internet.  Once we are removing files we can also remove a code copy of libjs-twitter-bootstrap
---
 debian/control                               |  3 ++-
 debian/copyright                             |  3 +++
 debian/patches/fetch_examples_from_web.patch | 19 +++++++++++++++++++
 debian/patches/series                        |  1 +
 4 files changed, 25 insertions(+), 1 deletion(-)

diff --git a/debian/control b/debian/control
index 922ec15..893d572 100644
--- a/debian/control
+++ b/debian/control
@@ -15,7 +15,8 @@ Homepage: http://biocore.github.io/emperor/
 Package: emperor
 Architecture: all
 Depends: ${misc:Depends},
-         ${python:Depends}
+         ${python:Depends},
+         libjs-twitter-bootstrap
 Description: tool for visualizing high-throughput microbial community data
  Emperor is an interactive next generation tool for the analysis, visualization
  and understanding of high throughput microbial ecology datasets.
diff --git a/debian/copyright b/debian/copyright
index 3ac5611..f154398 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -2,6 +2,9 @@ Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: EMPeror
 Upstream-Contact: Yoshiki Vázquez Baeza <yoshiki89 at gmail.com>
 Source: https://pypi.python.org/pypi/emperor
+Files-Excluded:
+    doc/files
+    doc/bootstrap
 
 Files: *
 Copyright: © 2013, The Emperor Project
diff --git a/debian/patches/fetch_examples_from_web.patch b/debian/patches/fetch_examples_from_web.patch
new file mode 100644
index 0000000..be6dce6
--- /dev/null
+++ b/debian/patches/fetch_examples_from_web.patch
@@ -0,0 +1,19 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 25 Feb 2014 15:17:10 +0100
+Description: The ZIP archive files/files.zip was removed from
+ the source archive since it contained some *.js files without
+ source and before we run into licensing trouble it is way more
+ simple to let people who want to test the examples from the
+ tutorial download this directly from the internet
+
+--- a/doc/tutorial_index.html
++++ b/doc/tutorial_index.html
+@@ -118,7 +118,7 @@
+             <br>
+             The dataset that we will use to exemplify Emperor’s functionality, comes from the <a href="http://www.pnas.org/content/107/14/6477.long">Fierer et. al. 2010</a> article, where three individuals and their keyboards were sampled, Figure 1.
+             <br>
+-            To get started, first download and unzip these <a href="files/files.zip">files</a>, here you will find a principal coordinates file, and a mapping file. These input files are in the standard format used in <a href="http://www.qiime.org">QIIME</a>. Before continuing with the tutorial make sure you have the latest version of <a href=" https://www.google.com/intl/en/chrome/browser/">Google Chrome</a> installed in your computer. The sections described in this tutorial are:
++            To get started, first download and unzip these <a href="http://biocore.github.io/emperor/files/files.zip">files</a>, here you will find a principal coordinates file, and a mapping file. These input files are in the standard format used in <a href="http://www.qiime.org">QIIME</a>. Before continuing with the tutorial make sure you have the latest version of <a href=" https://www.google.com/intl/en/chrome/browser/">Google Chrome</a> installed in your computer. The sections desc [...]
+             <br>
+             <ul >
+             <li><a class="lead" href="#section0">Command Line Interface</a></li>
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..458e8ae
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+fetch_examples_from_web.patch

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