[med-svn] [sniffles] 05/06: Update manpage

[Afif Elghraoui]

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afif pushed a commit to branch master
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commit eca4c2ef5d70166429f98f24430b3a012d9d6148
Author: Afif Elghraoui <afif at debian.org>
Date:   Mon Oct 17 01:36:32 2016 -0700

    Update manpage
    
    The changes here are based on the README updates in
    https://github.com/fritzsedlazeck/Sniffles/commit/ff3b4a6691bfc7ab26859d620398806d9ae43844
    which was not part of the latest release.
---
 debian/sniffles.1.md | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/debian/sniffles.1.md b/debian/sniffles.1.md
index 484a77c..87bb70d 100644
--- a/debian/sniffles.1.md
+++ b/debian/sniffles.1.md
@@ -1,4 +1,4 @@
-% SNIFFLES(1) 0.0.1
+% SNIFFLES(1) 1.0.0
 % Fritz Sedlazeck <fritz.sedlazech at gmail.com>
 %
 
@@ -10,7 +10,7 @@ sniffles - structural variation caller for third-generation sequencing data
 
 **sniffles**  -m *string* [-s *int*] [--max_num_splits *int*] [-q *int*]
                [-l *int*] [-v *string*] [--bede *string*] [-c *int*] [-t
-               *int*] [-d *int*] [-n *int*] [--use_MD_Cigar] [--]
+               *int*] [-d *int*] [-n *int*] [--]
                [--version] [-h]
 
 **sniffles** **-m** *reads.bam* **-v** *calls.vcf*
@@ -55,10 +55,6 @@ Sniffles is a structural variation caller using third generation sequencing (Pac
    -n *int*,  --num_reads_report *int*
 :     Report up to N reads that support the SV. Default: 0
 
-   --use_MD_Cigar
-:     Enables Sniffles to use the alignment information to screen for
-     suspicious regions.
-
    --,  --ignore_rest
 :     Ignores the rest of the labeled arguments following this flag.
 

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