[med-svn] [harvest-tools] 02/06: Merge tag 'upstream/1.3'

[Andreas Tille]

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tille pushed a commit to branch master
in repository harvest-tools.

commit 99b1e83967e005afe9f6a8f1ed62c37605011d77
Merge: 7e42d85 a2f141c
Author: Andreas Tille <tille at debian.org>
Date:   Fri Oct 21 11:02:04 2016 +0200

    Merge tag 'upstream/1.3'
    
    Upstream version 1.3

 INSTALL.txt                       |  38 +++++--
 Makefile.in                       |   6 +-
 README.md                         |  18 ++--
 configure.ac                      |   2 +-
 src/harvest/AnnotationList.cpp    |  27 ++++-
 src/harvest/AnnotationList.h      |   7 +-
 src/harvest/HarvestIO.cpp         |  42 +++++++-
 src/harvest/HarvestIO.h           |   3 +-
 src/harvest/LcbList.cpp           | 121 ++++++++++++++++++++++
 src/harvest/LcbList.h             |   1 +
 src/harvest/PhylogenyTree.cpp     |  43 ++++++++
 src/harvest/PhylogenyTree.h       |   1 +
 src/harvest/PhylogenyTreeNode.cpp |   5 +-
 src/harvest/PhylogenyTreeNode.h   |   5 +-
 src/harvest/ReferenceList.cpp     |  14 +--
 src/harvest/ReferenceList.h       |  12 +--
 src/harvest/VariantList.cpp       | 210 +++++++++++++++++++++++++++++++++-----
 src/harvest/VariantList.h         | 139 ++++++++++++++++++++++++-
 src/harvest/harvest.cpp           | 141 +++++++++++++++++++++++--
 19 files changed, 746 insertions(+), 89 deletions(-)

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