[med-svn] [blobology] 01/05: Move files around
Andreas Tille
tille at debian.org
Fri Oct 21 16:54:34 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository blobology.
commit 207009a14ed1b28a029448edb60cf5d7624c525c
Author: Andreas Tille <tille at debian.org>
Date: Fri Oct 21 14:51:03 2016 +0200
Move files around
---
debian/control | 9 +++++----
debian/docs | 1 +
debian/install | 4 ++++
debian/links | 2 ++
debian/patches/bash.patch | 11 +++++++++++
debian/patches/series | 1 +
debian/rules | 18 ++++++++----------
7 files changed, 32 insertions(+), 14 deletions(-)
diff --git a/debian/control b/debian/control
index 6ee8ccc..1c7e3ad 100644
--- a/debian/control
+++ b/debian/control
@@ -5,14 +5,15 @@ Section: science
Priority: optional
Build-Depends: debhelper (>= 9)
Standards-Version: 3.9.8
-Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/blobology.git
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/blobology.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/blobology.git
Homepage: https://blobtools.readme.io/
Package: blobology
-Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
+Architecture: all
+Depends: ${misc:Depends},
+ bowtie2,
+ r-base-core
Description: tool set for the visualisation of genome assemblies
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots
(TAGC plots) to visualise the contents of genome assembly data sets
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..b43bf86
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1 @@
+README.md
diff --git a/debian/install b/debian/install
new file mode 100644
index 0000000..091b0a6
--- /dev/null
+++ b/debian/install
@@ -0,0 +1,4 @@
+*.bash usr/lib/blobology
+*.fa usr/lib/blobology
+*.pl usr/lib/blobology
+*.R usr/lib/blobology
diff --git a/debian/links b/debian/links
new file mode 100644
index 0000000..3154849
--- /dev/null
+++ b/debian/links
@@ -0,0 +1,2 @@
+usr/lib/blobology/blobology.bash usr/bin/blobology
+usr/lib/blobology/separate_reads.bash usr/bin/separate_reads
diff --git a/debian/patches/bash.patch b/debian/patches/bash.patch
new file mode 100644
index 0000000..f2ee9a6
--- /dev/null
+++ b/debian/patches/bash.patch
@@ -0,0 +1,11 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Fri, 21 Oct 2016 12:12:18 +0200
+Description: Add missing interpreter line
+
+--- a/separate_reads.bash
++++ b/separate_reads.bash
+@@ -1,3 +1,4 @@
++#!/bin/bash
+ ###########################################################################
+ ## Step 1. Create contaminant databases
+ ###########################################################################
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..01d74c4
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+bash.patch
diff --git a/debian/rules b/debian/rules
index 1ef14d9..8287c94 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,26 +1,24 @@
#!/usr/bin/make -f
# DH_VERBOSE := 1
-export LC_ALL=C.UTF-8
# some helpful variables - uncomment them if needed
# shamelessly stolen from http://jmtd.net/log/awk/
#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
-#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
+DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
#GIT_TAG := $(subst ~,_,$(VERSION))
-# alternatively to manually set those variables, you can
-# include /usr/share/dpkg/default.mk
-# and use what is set there.
-
-# for hardening you might like to uncomment this:
-# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+LIBDIR=debian/$(DEBPKGNAME)/usr/lib/$(DEBPKGNAME)
%:
dh $@
-#get-orig-source:
-# . debian/get-orig-source
+override_dh_install:
+ dh_install
+ chmod +x $(LIBDIR)/*.bash
+
+get-orig-source:
+ . debian/get-orig-source
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/blobology.git
More information about the debian-med-commit
mailing list