[med-svn] [python-cobra] 05/08: Merge tag 'upstream/0.5.2'

[Afif Elghraoui]

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commit 174522f6eea9af025c56c65f91cb4b9459d32281
Merge: 268c4b2 9170c94
Author: Afif Elghraoui <afif at debian.org>
Date:   Fri Oct 21 21:35:16 2016 -0700

    Merge tag 'upstream/0.5.2'
    
    Upstream version 0.5.2

 .travis.yml                                  |  96 +++++----------
 CONTRIBUTING.rst                             | 171 ++++++++++++++++++++++++---
 INSTALL.rst                                  |  77 +++++-------
 README.rst                                   |  77 +++++++++---
 cobra/VERSION                                |   2 +-
 cobra/core/ArrayBasedModel.py                |  21 ++--
 cobra/flux_analysis/phenotype_phase_plane.py |  15 ++-
 cobra/flux_analysis/variability.py           |  23 ++--
 cobra/test/data/textbook_solution.pickle     | Bin 0 -> 5278 bytes
 cobra/test/data/update_pickles.py            |   5 +
 cobra/test/flux_analysis.py                  |  36 ++++--
 cobra/test/unit_tests.py                     |  16 ++-
 config.sh                                    |  29 ++---
 develop-requirements.txt                     |  15 +++
 documentation_builder/faq.ipynb              |   2 +-
 documentation_builder/index.rst              |   5 +-
 make-mac-wheels.sh                           |  14 +++
 manylinux_builder/build_cobrapy.sh           |   1 +
 scripts/deploy.sh                            |   3 +-
 tox.ini                                      |  12 ++
 20 files changed, 413 insertions(+), 207 deletions(-)

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