[med-svn] r22885 - in trunk/packages/R/r-bioc-xvector/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2016-10-26 11:04:21 +0000 (Wed, 26 Oct 2016)
New Revision: 22885

Modified:
   trunk/packages/R/r-bioc-xvector/trunk/debian/changelog
   trunk/packages/R/r-bioc-xvector/trunk/debian/control
   trunk/packages/R/r-bioc-xvector/trunk/debian/copyright
   trunk/packages/R/r-bioc-xvector/trunk/debian/patches/use_debian_packaged_zlib.patch
   trunk/packages/R/r-bioc-xvector/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/changelog	2016-10-26 10:15:37 UTC (rev 22884)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/changelog	2016-10-26 11:04:21 UTC (rev 22885)
@@ -1,3 +1,11 @@
+r-bioc-xvector (0.14.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Wed, 26 Oct 2016 12:59:46 +0200
+
 r-bioc-xvector (0.12.0-2) unstable; urgency=medium
 
   * Fix autopkgtest

Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/control	2016-10-26 10:15:37 UTC (rev 22884)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/control	2016-10-26 11:04:21 UTC (rev 22885)
@@ -2,23 +2,23 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
-Testsuite: autopkgtest
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-bioc-iranges (>= 2.6.0)
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-xvector/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-xvector/trunk/
-Homepage: http://www.bioconductor.org/packages/release/bioc/html/XVector.html
+Homepage: https://bioconductor.org/packages/XVector/
 
 Package: r-bioc-xvector
 Architecture: any
 Depends: ${R:Depends},
          ${misc:Depends},
          ${shlibs:Depends},
-         r-bioc-iranges (>= 2.6.0)
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: BioConductor representation and manpulation of external sequences
  This BioConductor package provides memory efficient S4 classes for storing
  sequences "externally" (behind an R external pointer, or on disk).

Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/copyright	2016-10-26 10:15:37 UTC (rev 22884)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/copyright	2016-10-26 11:04:21 UTC (rev 22885)
@@ -1,14 +1,14 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: XVector
 Upstream-Contact: H. Pages <hpages at fhcrc.org>
-Source: http://www.bioconductor.org/packages/release/bioc/html/XVector.html
+Source: https://bioconductor.org/packages/XVector/
 
 Files: *
-Copyright: © 2006-2014 H. Pages and P. Aboyoun
+Copyright: © 2006-2016 H. Pages and P. Aboyoun
 License: Artistic-2.0
 
 Files: debian/*
-Copyright: 2013-2014 Andreas Tille <tille at debian.org>
+Copyright: 2013-2016 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/patches/use_debian_packaged_zlib.patch	2016-10-26 10:15:37 UTC (rev 22884)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/patches/use_debian_packaged_zlib.patch	2016-10-26 11:04:21 UTC (rev 22885)
@@ -7,7 +7,7 @@
 +++ b/DESCRIPTION
 @@ -9,7 +9,7 @@ Maintainer: Hervé Pagès <hpages at fredhu
  biocViews: Infrastructure, DataRepresentation
- Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.11.3), S4Vectors (>=
+ Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.19.2), S4Vectors (>=
          0.9.29), IRanges (>= 2.5.27)
 -Imports: methods, zlibbioc, BiocGenerics, S4Vectors, IRanges
 +Imports: methods, BiocGenerics, S4Vectors, IRanges

Modified: trunk/packages/R/r-bioc-xvector/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-xvector/trunk/debian/rules	2016-10-26 10:15:37 UTC (rev 22884)
+++ trunk/packages/R/r-bioc-xvector/trunk/debian/rules	2016-10-26 11:04:21 UTC (rev 22885)
@@ -1,4 +1,4 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R