[med-svn] r22889 - trunk/packages/R/r-bioc-snpstats/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-10-26 11:20:18 +0000 (Wed, 26 Oct 2016)
New Revision: 22889

Modified:
   trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog
   trunk/packages/R/r-bioc-snpstats/trunk/debian/control
   trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright
   trunk/packages/R/r-bioc-snpstats/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog	2016-10-26 11:11:30 UTC (rev 22888)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/changelog	2016-10-26 11:20:18 UTC (rev 22889)
@@ -1,3 +1,11 @@
+r-bioc-snpstats (1.24.0+dfsg-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Wed, 26 Oct 2016 13:14:09 +0200
+
 r-bioc-snpstats (1.22.0+dfsg-2) unstable; urgency=medium
 
   * Add missing test dependency (thanks for the patch to Gordon Ball)

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/control	2016-10-26 11:11:30 UTC (rev 22888)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/control	2016-10-26 11:20:18 UTC (rev 22889)
@@ -5,7 +5,7 @@
 Testsuite: autopkgtest
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-cran-survival,
                r-cran-matrix,
@@ -14,17 +14,15 @@
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-snpstats/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/snpStats.html
+Homepage: https://bioconductor.org/packages/snpStats/
 
 Package: r-bioc-snpstats
 Architecture: any
 Depends: ${R:Depends},
          ${misc:Depends},
-         ${shlibs:Depends},
-         r-cran-survival,
-         r-cran-matrix,
-         r-bioc-biocgenerics (>= 0.12.0)
-Suggests: r-cran-hexbin
+         ${shlibs:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: BioConductor SnpMatrix and XSnpMatrix classes and methods
  This BioConductor package provides R functions to work with
  SnpMatrix and XSnpMatrix classes and methods.

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright	2016-10-26 11:11:30 UTC (rev 22888)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/copyright	2016-10-26 11:20:18 UTC (rev 22889)
@@ -1,7 +1,7 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: snpStats
 Upstream-Contact: David Clayton <dc208 at cam.ac.uk> 
-Source: http://bioconductor.org/packages/release/bioc/html/snpStats.html
+Source: https://bioconductor.org/packages/snpStats/
 Files-Excluded: src/crc32.h
                 src/deflate.h
                 src/inffast.h
@@ -10,7 +10,7 @@
                 src/inftrees.h
 
 Files: *
-Copyright: 2006-2014 David Clayton <dc208 at cam.ac.uk>
+Copyright: 2006-2016 David Clayton <dc208 at cam.ac.uk>
 License: GPL-3
 
 Files: src/hash_index.*
@@ -22,7 +22,7 @@
 License: GPL-2+
 
 Files: debian/*
-Copyright: 2014 Andreas Tille <tille at debian.org>
+Copyright: 2014-2016 Andreas Tille <tille at debian.org>
 License: GPL-3
 
 License: GPL-3

Modified: trunk/packages/R/r-bioc-snpstats/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-snpstats/trunk/debian/rules	2016-10-26 11:11:30 UTC (rev 22888)
+++ trunk/packages/R/r-bioc-snpstats/trunk/debian/rules	2016-10-26 11:20:18 UTC (rev 22889)
@@ -1,4 +1,4 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R