[med-svn] r22895 - trunk/packages/R/r-bioc-multtest/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-10-26 11:57:57 +0000 (Wed, 26 Oct 2016)
New Revision: 22895

Modified:
   trunk/packages/R/r-bioc-multtest/trunk/debian/changelog
   trunk/packages/R/r-bioc-multtest/trunk/debian/control
   trunk/packages/R/r-bioc-multtest/trunk/debian/copyright
   trunk/packages/R/r-bioc-multtest/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-multtest/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/changelog	2016-10-26 11:53:58 UTC (rev 22894)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/changelog	2016-10-26 11:57:57 UTC (rev 22895)
@@ -1,3 +1,11 @@
+r-bioc-multtest (2.30.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Wed, 26 Oct 2016 13:52:16 +0200
+
 r-bioc-multtest (2.26.0-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-multtest/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/control	2016-10-26 11:53:58 UTC (rev 22894)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/control	2016-10-26 11:57:57 UTC (rev 22895)
@@ -4,24 +4,23 @@
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-bioc-biobase,
                r-cran-survival,
                r-cran-mass
-Standards-Version: 3.9.6
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-multtest/trunk/
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-multtest/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-multtest/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/multtest.html
+Homepage: https://bioconductor.org/packages//multtest/
 
 Package: r-bioc-multtest
 Architecture: any
 Depends: ${R:Depends},
          ${misc:Depends},
          ${shlibs:Depends},
-         r-bioc-biobase,
-         r-cran-survival,
-         r-cran-mass
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: Bioconductor resampling-based multiple hypothesis testing
  Non-parametric bootstrap and permutation resampling-based multiple
  testing procedures (including empirical Bayes methods) for controlling

Modified: trunk/packages/R/r-bioc-multtest/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/copyright	2016-10-26 11:53:58 UTC (rev 22894)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/copyright	2016-10-26 11:57:57 UTC (rev 22895)
@@ -1,15 +1,15 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: multtest
 Upstream-Contact: Katherine S. Pollard <kpollard at gladstone.ucsf.edu>
-Source: http://bioconductor.org/packages/release/bioc/html/multtest.html
+Source: https://bioconductor.org/packages//multtest/
 
 Files: *
-Copyright: © 2006-2015 Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra Taylor, Sandrine Dudoit
+Copyright: © 2006-2016 Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra Taylor, Sandrine Dudoit
 License: LGPL-3+
 
 
 Files: debian/*
-Copyright: 2015 Andreas Tille <tille at debian.org>
+Copyright: 2015-2016 Andreas Tille <tille at debian.org>
 License: LGPL-3+
 
 License: LGPL-3+

Modified: trunk/packages/R/r-bioc-multtest/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-multtest/trunk/debian/rules	2016-10-26 11:53:58 UTC (rev 22894)
+++ trunk/packages/R/r-bioc-multtest/trunk/debian/rules	2016-10-26 11:57:57 UTC (rev 22895)
@@ -1,7 +1,16 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+debRreposname   := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}' | sed 's/r-\([a-z]\+\)-.*/\1/')
+awkString       := "'/^(Package|Bundle):/ {print $$2 }'"
+cranNameOrig    := $(shell awk "$(awkString)" DESCRIPTION)
+cranName        := $(shell echo "$(cranNameOrig)" | tr A-Z a-z)
+package         := r-$(debRreposname)-$(cranName)
+debRdir         := usr/lib/R/site-library
+debRlib         := $(CURDIR)/debian/$(package)/$(debRdir)
 
-install/$(package)::
-	chmod 644 debian/$(package)/usr/lib/R/site-library/$(cranNameOrig)/otherDocs/*.Rnw
+%:
+	dh $@ --buildsystem R
+
+override_dh_fixperms:
+	dh_fixperms
+	chmod -x $(debRlib)/$(cranNameOrig)/otherDocs/*.Rnw