[med-svn] r22915 - trunk/packages/R/r-bioc-shortread/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-10-26 15:16:15 +0000 (Wed, 26 Oct 2016)
New Revision: 22915

Modified:
   trunk/packages/R/r-bioc-shortread/trunk/debian/changelog
   trunk/packages/R/r-bioc-shortread/trunk/debian/control
   trunk/packages/R/r-bioc-shortread/trunk/debian/copyright
   trunk/packages/R/r-bioc-shortread/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/changelog	2016-10-26 15:07:38 UTC (rev 22914)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/changelog	2016-10-26 15:16:15 UTC (rev 22915)
@@ -1,3 +1,11 @@
+r-bioc-shortread (1.32.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Wed, 26 Oct 2016 17:08:54 +0200
+
 r-bioc-shortread (1.30.0-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/control	2016-10-26 15:07:38 UTC (rev 22914)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/control	2016-10-26 15:16:15 UTC (rev 22915)
@@ -2,10 +2,9 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
-Testsuite: autopkgtest
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-cran-latticeextra,
                r-bioc-biobase (>= 2.26.0),
@@ -14,17 +13,15 @@
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
-Homepage: http://www.bioconductor.org/packages/release/bioc/html/ShortRead.html
+Homepage: https://bioconductor.org/packages/ShortRead/
 
 Package: r-bioc-shortread
 Architecture: any
 Depends: ${R:Depends},
          ${misc:Depends},
          ${shlibs:Depends},
-         r-cran-latticeextra,
-         r-bioc-biobase (>= 2.26.0),
-         r-bioc-genomicalignments (>= 1.8.0),
-         r-cran-hwriter
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R classes and methods for high-throughput short-read sequencing data
  This BioConductor module is a package for input, quality assessment,
  manipulation and output of high-throughput sequencing data. ShortRead is

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/copyright	2016-10-26 15:07:38 UTC (rev 22914)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/copyright	2016-10-26 15:16:15 UTC (rev 22915)
@@ -1,10 +1,10 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: ShortRead
 Upstream-Contact: Bioconductor Package Maintainer <maintainer at bioconductor.org> 
-Source: http://www.bioconductor.org/packages/release/bioc/html/ShortRead.html
+Source: https://bioconductor.org/packages/ShortRead/
 
 Files: *
-Copyright: © 2006-2014 Martin Morgan, Michael Lawrence, Simon Anders
+Copyright: © 2006-2016 Martin Morgan, Michael Lawrence, Simon Anders
 License: Artistic-2.0
 
 Files: src/const.h src/maqmap_m.h
@@ -29,7 +29,7 @@
 Comment: The files are adapted from maq which is also packaged for Debian.
 
 Files: debian/*
-Copyright: 2013-2014 Andreas Tille <tille at debian.org>
+Copyright: 2013-2016 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-shortread/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-shortread/trunk/debian/rules	2016-10-26 15:07:38 UTC (rev 22914)
+++ trunk/packages/R/r-bioc-shortread/trunk/debian/rules	2016-10-26 15:16:15 UTC (rev 22915)
@@ -1,4 +1,4 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R