[med-svn] r22917 - trunk/packages/R/r-bioc-rsamtools/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-10-26 15:23:57 +0000 (Wed, 26 Oct 2016)
New Revision: 22917

Modified:
   trunk/packages/R/r-bioc-rsamtools/trunk/debian/changelog
   trunk/packages/R/r-bioc-rsamtools/trunk/debian/control
   trunk/packages/R/r-bioc-rsamtools/trunk/debian/copyright
   trunk/packages/R/r-bioc-rsamtools/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-rsamtools/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-rsamtools/trunk/debian/changelog	2016-10-26 15:17:11 UTC (rev 22916)
+++ trunk/packages/R/r-bioc-rsamtools/trunk/debian/changelog	2016-10-26 15:23:57 UTC (rev 22917)
@@ -1,3 +1,11 @@
+r-bioc-rsamtools (1.26.1-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Wed, 26 Oct 2016 17:15:09 +0200
+
 r-bioc-rsamtools (1.24.0-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-rsamtools/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-rsamtools/trunk/debian/control	2016-10-26 15:17:11 UTC (rev 22916)
+++ trunk/packages/R/r-bioc-rsamtools/trunk/debian/control	2016-10-26 15:23:57 UTC (rev 22917)
@@ -4,7 +4,7 @@
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-cran-bitops,
                r-bioc-biostrings (>= 2.40.0),
@@ -14,18 +14,15 @@
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-rsamtools/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-rsamtools/trunk/
-Homepage: http://www.bioconductor.org/packages/release/bioc/html/Rsamtools.html
+Homepage: https://bioconductor.org/packages/Rsamtools/
 
 Package: r-bioc-rsamtools
 Architecture: any
 Depends: ${R:Depends},
          ${misc:Depends},
          ${shlibs:Depends},
-         r-cran-bitops,
-         r-bioc-biostrings (>= 2.40.0),
-         r-bioc-genomicranges (>= 1.24.0),
-         r-bioc-biocparallel
-Recommends: r-bioc-shortread
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  This package provides an interface to the 'samtools', 'bcftools', and
  'tabix' utilities for manipulating SAM (Sequence Alignment / Map),

Modified: trunk/packages/R/r-bioc-rsamtools/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-rsamtools/trunk/debian/copyright	2016-10-26 15:17:11 UTC (rev 22916)
+++ trunk/packages/R/r-bioc-rsamtools/trunk/debian/copyright	2016-10-26 15:23:57 UTC (rev 22917)
@@ -1,15 +1,15 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: Rsamtools
 Upstream-Contact: Bioconductor Package Maintainer <maintainer at bioconductor.org> 
-Source: http://www.bioconductor.org/packages/release/bioc/html/Rsamtools.html
+Source: https://bioconductor.org/packages/Rsamtools/
 
 Files: *
-Copyright: © 2006-2014 Martin Morgan, Hervé Pagès 
+Copyright: © 2006-2016 Martin Morgan, Hervé Pagès 
 License: Artistic-2.0
 
 
 Files: debian/*
-Copyright: 2013-2014 Andreas Tille <tille at debian.org>
+Copyright: 2013-2016 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-rsamtools/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-rsamtools/trunk/debian/rules	2016-10-26 15:17:11 UTC (rev 22916)
+++ trunk/packages/R/r-bioc-rsamtools/trunk/debian/rules	2016-10-26 15:23:57 UTC (rev 22917)
@@ -1,11 +1,4 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
-
-install/$(package)::
-	rm -rf debian/$(package)/usr/lib/R/site-library/$(cranNameOrig)/LICENSE
-
-clean::
-	dh_clean
-	rm -f src/*.a
+%:
+	dh $@ --buildsystem R