[med-svn] r22919 - trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-10-26 20:24:40 +0000 (Wed, 26 Oct 2016)
New Revision: 22919

Modified:
   trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/changelog
   trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/control
   trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/copyright
   trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage
  * New Build-Depends: r-cran-matrix
  * New versioned Build-Depends: r-bioc-s4vectors (>= 0.11.7),
    r-bioc-iranges (>= 2.7.2),



Modified: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/changelog	2016-10-26 15:24:39 UTC (rev 22918)
+++ trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/changelog	2016-10-26 20:24:40 UTC (rev 22919)
@@ -1,3 +1,14 @@
+r-bioc-summarizedexperiment (1.4.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+  * New Build-Depends: r-cran-matrix
+  * New versioned Build-Depends: r-bioc-s4vectors (>= 0.11.7),
+    r-bioc-iranges (>= 2.7.2),
+
+ -- Andreas Tille <tille at debian.org>  Wed, 26 Oct 2016 21:57:26 +0200
+
 r-bioc-summarizedexperiment (1.2.0-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/control	2016-10-26 15:24:39 UTC (rev 22918)
+++ trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/control	2016-10-26 20:24:40 UTC (rev 22919)
@@ -4,22 +4,24 @@
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-bioc-biobase (>= 2.26.0),
-               r-bioc-genomicranges (>= 1.24.0)
+               r-bioc-genomicranges (>= 1.24.0),
+               r-bioc-s4vectors (>= 0.11.7),
+               r-bioc-iranges (>= 2.7.2),
+               r-cran-matrix
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-summarizedexperiment/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-summarizedexperiment/trunk/
-Homepage: http://www.bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html
+Homepage: https://bioconductor.org/packages/SummarizedExperiment/
 
 Package: r-bioc-summarizedexperiment
 Architecture: all
 Depends: ${R:Depends},
          ${misc:Depends},
-         r-bioc-biobase (>= 2.26.0),
-         r-bioc-genomicranges (>= 1.24.0)
-Recommends: r-bioc-annotate
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: BioConductor assay container
  The SummarizedExperiment container contains one or more assays, each
  represented by a matrix-like object of numeric or other mode. The rows

Modified: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/copyright	2016-10-26 15:24:39 UTC (rev 22918)
+++ trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/copyright	2016-10-26 20:24:40 UTC (rev 22919)
@@ -1,15 +1,15 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: SummarizedExperiment
 Upstream-Contact: Bioconductor Package Maintainer <maintainer at bioconductor.org> 
-Source: http://www.bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html
+Source: https://bioconductor.org/packages/SummarizedExperiment/
 
 Files: *
-Copyright: © 2014-2015 Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès
+Copyright: © 2014-2016 Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès
 License: Artistic-2.0
 
 
 Files: debian/*
-Copyright: 2015 Andreas Tille <tille at debian.org>
+Copyright: 2015-2016 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/rules	2016-10-26 15:24:39 UTC (rev 22918)
+++ trunk/packages/R/r-bioc-summarizedexperiment/trunk/debian/rules	2016-10-26 20:24:40 UTC (rev 22919)
@@ -1,11 +1,4 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
-
-install/$(package)::
-	rm -rf debian/$(package)/usr/lib/R/site-library/$(cranNameOrig)/LICENSE
-
-clean::
-	dh_clean
-	rm -f src/*.a
+%:
+	dh $@ --buildsystem R