[med-svn] r22929 - trunk/packages/R/r-bioc-bsgenome/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-10-27 11:33:11 +0000 (Thu, 27 Oct 2016)
New Revision: 22929

Modified:
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/control
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/copyright
   trunk/packages/R/r-bioc-bsgenome/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog	2016-10-27 09:54:42 UTC (rev 22928)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/changelog	2016-10-27 11:33:11 UTC (rev 22929)
@@ -1,3 +1,11 @@
+r-bioc-bsgenome (1.42.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Thu, 27 Oct 2016 12:42:44 +0200
+
 r-bioc-bsgenome (1.40.0-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/control	2016-10-27 09:54:42 UTC (rev 22928)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/control	2016-10-27 11:33:11 UTC (rev 22929)
@@ -4,19 +4,20 @@
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-bioc-rtracklayer (>= 1.26.0)
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-bsgenome/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-bsgenome/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/BSgenome.html
+Homepage: https://bioconductor.org/packages/BSgenome/
 
 Package: r-bioc-bsgenome
 Architecture: all
 Depends: ${R:Depends},
          ${misc:Depends},
-         r-bioc-rtracklayer (>= 1.26.0)
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: BioConductor infrastructure for Biostrings-based genome data packages
  This BioConductor module provides some basic infrastructure for
  Biostrings-based genome data packages.

Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/copyright	2016-10-27 09:54:42 UTC (rev 22928)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/copyright	2016-10-27 11:33:11 UTC (rev 22929)
@@ -1,15 +1,15 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: BSgenome
 Upstream-Contact: Herve Pages <hpages at fhcrc.org>
-Source: http://bioconductor.org/packages/release/bioc/html/BSgenome.html
+Source: https://bioconductor.org/packages/BSgenome/
 
 Files: *
-Copyright: © 2006-2014 Herve Pages <hpages at fhcrc.org>
+Copyright: © 2006-2016 Herve Pages <hpages at fhcrc.org>
 License: Artistic-2.0
 
 
 Files: debian/*
-Copyright: 2013-2014 Andreas Tille <tille at debian.org>
+Copyright: 2013-2016 Andreas Tille <tille at debian.org>
 License: Artistic-2.0
 
 License: Artistic-2.0

Modified: trunk/packages/R/r-bioc-bsgenome/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-bsgenome/trunk/debian/rules	2016-10-27 09:54:42 UTC (rev 22928)
+++ trunk/packages/R/r-bioc-bsgenome/trunk/debian/rules	2016-10-27 11:33:11 UTC (rev 22929)
@@ -1,7 +1,8 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R
 
-install/$(package)::
-	chmod -x debian/$(package)/usr/lib/R/site-library/$(cranNameOrig)/extdata/GentlemanLab/*/splitbigfasta.R
+override_dh_install:
+	dh_install
+	find debian -name "*.R" -exec chmod -x \{\} \;