[med-svn] [rambo-k] branch master updated (809e262 -> 4b5312e)

[Andreas Tille]

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tille pushed a change to branch master
in repository rambo-k.

      from  809e262   Try to create jar files and notice that some non-free Geneious code (com.biomatters.geneious.publicapi.documents.sequence) seems to be needed :-(  (Back to negotians with upstream)
       new  c72ba3b   Upstream says using r5 instead of r8 (latest) should work without Genious code
       new  4d024e3   Use r5 from SVN which does not require Genious code
       new  c988c5c   New upstream version 1.21+r5
       new  bb422b6   Merge tag 'upstream/1.21+r5'
       new  08a00d9   Fix changelog
       new  4b5312e   Create jar file

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Summary of changes:
 RAMBO-K-plugin_eclipse/.classpath                  |   9 -
 RAMBO-K-plugin_eclipse/.project                    |  17 --
 .../RAMBO-K Indexer (32 bit).launch                |  27 ---
 .../RAMBO-K indexer (64 bit).launch                |  27 ---
 RAMBO-K-plugin_eclipse/RAMBO-K-Indexer.iml         |  13 --
 RAMBO-K-plugin_eclipse/plugin.properties           |  11 --
 .../org/rki/rambok/indexer/GeneiousDataReader.java |  56 ------
 .../org/rki/rambok/indexer/GeneiousDataWriter.java |  73 --------
 .../src/org/rki/rambok/indexer/GeneiousReader.java |  82 --------
 .../src/org/rki/rambok/indexer/GeneiousWriter.java |  53 ------
 .../src/org/rki/rambok/indexer/Indexer.java        | 189 -------------------
 .../src/org/rki/rambok/indexer/IndexerPlugin.java  |  92 ---------
 .../rki/rambok/indexer/RAMBOKProgressListener.java |  43 -----
 .../src/org/rki/rambok/indexer/RAMBOKresult.java   | 206 ---------------------
 .../rambok/indexer/RAMBOKresultDocumentViewer.java |  79 --------
 ReadClassifier_eclipse/.classpath                  |   1 -
 .../src/org/rki/readclassifier/AbstractWriter.java |   7 -
 .../src/org/rki/readclassifier/Classifier.java     |   2 +-
 .../readclassifier/ClassifierProgressListener.java |   5 -
 .../org/rki/readclassifier/ClassifierThread.java   |  41 ++--
 .../src/org/rki/readclassifier/MMClassifier.java   |  38 ----
 .../src/org/rki/readclassifier/Read.java           |  19 +-
 .../src/org/rki/readclassifier/Reader.java         |   6 +-
 .../src/org/rki/readclassifier/Writer.java         |   2 +-
 .../src/org/rki/readtrainer/AbstractReader.java    |   9 -
 .../src/org/rki/readtrainer/Trainer.java           |   2 +-
 .../rki/readtrainer/TrainerProgressListener.java   |   5 -
 .../src/org/rki/readtrainer/TrainerThread.java     |   9 +-
 debian/changelog                                   |   4 +-
 debian/get-orig-source                             |  29 ++-
 debian/rules                                       |  19 +-
 31 files changed, 50 insertions(+), 1125 deletions(-)
 delete mode 100644 RAMBO-K-plugin_eclipse/.classpath
 delete mode 100644 RAMBO-K-plugin_eclipse/.project
 delete mode 100644 RAMBO-K-plugin_eclipse/RAMBO-K Indexer (32 bit).launch
 delete mode 100644 RAMBO-K-plugin_eclipse/RAMBO-K indexer (64 bit).launch
 delete mode 100644 RAMBO-K-plugin_eclipse/RAMBO-K-Indexer.iml
 delete mode 100644 RAMBO-K-plugin_eclipse/plugin.properties
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/GeneiousDataReader.java
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/GeneiousDataWriter.java
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/GeneiousReader.java
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/GeneiousWriter.java
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/Indexer.java
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/IndexerPlugin.java
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/RAMBOKProgressListener.java
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/RAMBOKresult.java
 delete mode 100644 RAMBO-K-plugin_eclipse/src/org/rki/rambok/indexer/RAMBOKresultDocumentViewer.java
 delete mode 100644 ReadClassifier_eclipse/src/org/rki/readclassifier/AbstractWriter.java
 delete mode 100644 ReadClassifier_eclipse/src/org/rki/readclassifier/ClassifierProgressListener.java
 delete mode 100644 ReadTrainer_eclipse/src/org/rki/readtrainer/AbstractReader.java
 delete mode 100644 ReadTrainer_eclipse/src/org/rki/readtrainer/TrainerProgressListener.java

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