[med-svn] [rambo-k] 01/02: Create some somehow working file layout

[Andreas Tille]

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tille pushed a commit to branch master
in repository rambo-k.

commit 843dccc994a5711f8f76d1ae58fdc7e9de4cdd4a
Author: Andreas Tille <tille at debian.org>
Date:   Thu Oct 27 16:58:02 2016 +0200

    Create some somehow working file layout
---
 debian/control  | 15 ++++++++++-----
 debian/install  |  1 +
 debian/jlibs    |  1 +
 debian/manifest |  2 ++
 debian/rules    |  4 ++--
 5 files changed, 16 insertions(+), 7 deletions(-)

diff --git a/debian/control b/debian/control
index 2c43051..68b9520 100644
--- a/debian/control
+++ b/debian/control
@@ -1,19 +1,24 @@
 Source: rambo-k
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
 Build-Depends: debhelper (>= 9),
+               javahelper,
+               default-jdk,
+               python-all,
                libcommons-cli-java,
                liblog4j1.2-java
-Standards-Version: 3.9.6
+Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/rambo-k.git
-Vcs-Git: git://anonscm.debian.org/debian-med/rambo-k.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/rambo-k.git
 Homepage: http://rambok.sourceforge.net/
+X-Python-Version: >= 2.7
 
 Package: rambo-k
 Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${shlibs:Depends},
+         ${misc:Depends}
 Description: Read Assignment Method Based On K-mers
  RAMBO-K is a tool for rapid and sensitive removal of background
  sequences from Next Generation Sequencing data. 
diff --git a/debian/install b/debian/install
new file mode 100644
index 0000000..078628b
--- /dev/null
+++ b/debian/install
@@ -0,0 +1 @@
+*.py	usr/share/rambo-k
diff --git a/debian/jlibs b/debian/jlibs
new file mode 100644
index 0000000..6ca5dd7
--- /dev/null
+++ b/debian/jlibs
@@ -0,0 +1 @@
+rambo-k-classifier.jar
diff --git a/debian/manifest b/debian/manifest
new file mode 100644
index 0000000..fc35581
--- /dev/null
+++ b/debian/manifest
@@ -0,0 +1,2 @@
+/usr/share/java/rambo-k-classifier.jar:
+ Class-Path: /usr/share/java/commons-cli.jar
diff --git a/debian/rules b/debian/rules
index 7b570b9..76a1cd2 100755
--- a/debian/rules
+++ b/debian/rules
@@ -17,14 +17,14 @@
 # a similar manner are welcome.
 
 %:
-	dh $@
+	dh $@ --with javahelper --with python2
 
 makejarsimple:
 	javac -classpath /usr/share/java/commons-cli.jar:ReadTrainer_eclipse/src/org/rki/readtrainer/ \
 		ReadClassifier_eclipse/src/org/rki/readclassifier/*.java \
 		ReadTrainer_eclipse/src/org/rki/readtrainer/*.java
 
-override_dh_auto_build: makejarsimple
+override_dh_auto_build:
 	CLASSPATH=/usr/share/java/commons-cli.jar:ReadTrainer_eclipse/src/org/rki/readtrainer/:ReadClassifier_eclipse/src/ jh_build rambo-k-classifier.jar ReadClassifier_eclipse ReadTrainer_eclipse
 
 get-orig-source:

-- 
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