[med-svn] [r-bioc-deseq2] branch master updated (0a242e7 -> d935f37)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository r-bioc-deseq2.

      from  0a242e7   Upload to unstable
       new  072b76f   New upstream version 1.14.0
       new  454772a   Merge tag 'upstream/1.14.0'
       new  51e9c6a   New upstream version
       new  d0c36d9   Add myself to Uploaders
       new  c88135d   Convert to dh-r
       new  e0d57d7   Really add myself as Uploader
       new  0bdca44   Refresh patches
       new  d935f37   Upload to unstable

The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                       |   10 +-
 NEWS                              |   12 +-
 R/AllClasses.R                    |    7 +-
 R/core.R                          |  102 +-
 R/expanded.R                      |    2 +-
 R/helper.R                        |   32 +-
 R/methods.R                       |    2 +-
 R/results.R                       |    7 +-
 R/rlog.R                          |    4 +-
 debian/changelog                  |    8 +
 debian/control                    |   18 +-
 debian/patches/remove-locfit      |  148 +-
 debian/rules                      |    5 +-
 inst/doc/DESeq2.R                 |  239 +-
 inst/doc/DESeq2.Rnw               | 4891 ++++++++++++++++++-------------------
 inst/doc/DESeq2.pdf               |  Bin 700920 -> 673682 bytes
 man/collapseReplicates.Rd         |    3 +
 man/estimateBetaPriorVar.Rd       |    4 +-
 man/estimateDispersionsGeneEst.Rd |    7 +-
 tests/testthat/test_linear_mu.R   |   20 +
 vignettes/DESeq2.Rnw              | 4891 ++++++++++++++++++-------------------
 21 files changed, 5195 insertions(+), 5217 deletions(-)
 create mode 100644 tests/testthat/test_linear_mu.R

-- 
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