[med-svn] [r-bioc-deseq2] 02/08: Merge tag 'upstream/1.14.0'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-deseq2.

commit 454772a81ef74b18adb5a02c52ce3b4663df78a2
Merge: 0a242e7 072b76f
Author: Andreas Tille <tille at debian.org>
Date:   Thu Oct 27 18:17:31 2016 +0200

    Merge tag 'upstream/1.14.0'
    
    Upstream version 1.14.0

 DESCRIPTION                       |   10 +-
 NEWS                              |   12 +-
 R/AllClasses.R                    |    7 +-
 R/core.R                          |  102 +-
 R/expanded.R                      |    2 +-
 R/helper.R                        |   32 +-
 R/methods.R                       |    2 +-
 R/results.R                       |    7 +-
 R/rlog.R                          |    4 +-
 inst/doc/DESeq2.R                 |  239 +-
 inst/doc/DESeq2.Rnw               | 4891 ++++++++++++++++++-------------------
 inst/doc/DESeq2.pdf               |  Bin 700920 -> 673682 bytes
 man/collapseReplicates.Rd         |    3 +
 man/estimateBetaPriorVar.Rd       |    4 +-
 man/estimateDispersionsGeneEst.Rd |    7 +-
 tests/testthat/test_linear_mu.R   |   20 +
 vignettes/DESeq2.Rnw              | 4891 ++++++++++++++++++-------------------
 17 files changed, 5106 insertions(+), 5127 deletions(-)

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