[med-svn] [r-bioc-limma] 02/06: Merge tag 'upstream/3.30.0+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-bioc-limma.

commit 0c109dcd346f8f13cedb8a1043801906ef49d3fa
Merge: 58164b2 75e8fab
Author: Andreas Tille <tille at debian.org>
Date:   Fri Oct 28 09:25:43 2016 +0200

    Merge tag 'upstream/3.30.0+dfsg'
    
    Upstream version 3.30.0+dfsg

 DESCRIPTION                   |   6 +--
 R/cumOverlap.R                |  45 +++++++++++++++++
 R/dups.R                      |   9 ++--
 R/fitFDistRobustly.R          |  46 ++++++++---------
 R/geneset-fry.R               |   2 +-
 R/geneset-roast.R             |   2 +-
 R/norm.R                      |   6 +--
 R/plotMDS.R                   |  11 +++--
 R/plotrldf.R                  |  22 ++++++---
 R/voom.R                      |   5 +-
 inst/NEWS.Rd                  | 111 +++++++++++++++++++++++++++++++++++++++++-
 inst/doc/changelog.txt        |  77 ++++++++++++++++++++++-------
 inst/doc/intro.pdf            | Bin 46191 -> 43301 bytes
 man/01Introduction.Rd         |   5 ++
 man/cumOverlap.Rd             |  49 +++++++++++++++++++
 man/detectionPValue.Rd        |   2 +
 man/ebayes.Rd                 |   2 +-
 man/fitfdist.Rd               |   9 +---
 man/goana.Rd                  |  25 ++++++----
 man/ids2indices.Rd            |   6 +--
 man/plotMDS.Rd                |  10 ++--
 man/plotRLDF.Rd               |  19 +++++---
 man/squeezeVar.Rd             |   2 +-
 man/voom.Rd                   |  14 ++++--
 man/voomWithQualityWeights.Rd |  10 ++--
 tests/limma-Tests.Rout.save   |  56 ++++++++++-----------
 26 files changed, 418 insertions(+), 133 deletions(-)

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