[med-svn] [fastaq] 04/04: adjust spelling patch

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository fastaq.

commit 1915a39006085e63006689d7cf7d57df6fc4bcaa
Author: Sascha Steinbiss <satta at debian.org>
Date:   Thu Sep 1 12:50:33 2016 +0000

    adjust spelling patch
---
 debian/patches/spelling | 24 +++++++++++-------------
 1 file changed, 11 insertions(+), 13 deletions(-)

diff --git a/debian/patches/spelling b/debian/patches/spelling
index 4e354e2..336356a 100644
--- a/debian/patches/spelling
+++ b/debian/patches/spelling
@@ -1,15 +1,13 @@
 Description: spelling 
 Author: Sascha Steinbiss <satta at debian.org>
-Forwarded: https://github.com/sanger-pathogens/Fastaq/pull/62
-Applied-Upstream: https://github.com/sanger-pathogens/Fastaq/pull/62
---- a/pyfastaq/runners/to_random_subset.py
-+++ b/pyfastaq/runners/to_random_subset.py
-@@ -6,7 +6,7 @@
- def run(description):
-     parser = argparse.ArgumentParser(
-         description = 'Takes a random subset of reads from a sequence file and optionally the corresponding read ' +
--                      'from a mates file.  Ouptut is interleaved if mates file given',
-+                      'from a mates file.  Output is interleaved if mates file given',
-         usage = 'fastaq to_random_subset [options] <infile> <outfile> <percent>')
-     parser.add_argument('--mate_file', help='Name of mates file')
-     parser.add_argument('--seed', help='Seed for random number generator. If not given, python\'s default is used', metavar='INT')
+--- a/pyfastaq/runners/make_random_contigs.py
++++ b/pyfastaq/runners/make_random_contigs.py
+@@ -9,7 +9,7 @@
+     parser.add_argument('--name_by_letters', action='store_true', help='Name the contigs A,B,C,... will start at A again if you get to Z')
+     parser.add_argument('--prefix', help='Prefix to add to start of every sequence name', default='')
+     parser.add_argument('--seed', type=int, help='Seed for random number generator. Default is to use python\'s default', default=None)
+-    parser.add_argument('contigs', type=int, help='Nunber of contigs to make')
++    parser.add_argument('contigs', type=int, help='Number of contigs to make')
+     parser.add_argument('length', type=int, help='Length of each contig')
+     parser.add_argument('outfile', help='Name of output file')
+     options = parser.parse_args()

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