[med-svn] [fastaq] branch upstream updated (21955d0 -> ac31224)

Sascha Steinbiss satta at debian.org
Thu Sep 1 12:51:08 UTC 2016


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satta pushed a change to branch upstream
in repository fastaq.

      from  21955d0   Imported Upstream version 3.13.0
       new  ac31224   Imported Upstream version 3.14.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                                             |  1 +
 .../{strip_illumina_suffix.py => acgtn_only.py}       |  7 ++++---
 pyfastaq/runners/to_random_subset.py                  |  2 +-
 pyfastaq/sequences.py                                 |  6 ++++++
 pyfastaq/tasks.py                                     | 19 ++++++++++++++-----
 pyfastaq/tests/data/test_acgtn_only.expected.fa       |  4 ++++
 pyfastaq/tests/data/test_acgtn_only.in.fa             |  4 ++++
 pyfastaq/tests/sequences_test.py                      | 14 ++++++++++++++
 pyfastaq/tests/tasks_test.py                          | 12 ++++++++++++
 scripts/fastaq                                        |  3 ++-
 setup.py                                              |  2 +-
 11 files changed, 63 insertions(+), 11 deletions(-)
 copy pyfastaq/runners/{strip_illumina_suffix.py => acgtn_only.py} (56%)
 create mode 100644 pyfastaq/tests/data/test_acgtn_only.expected.fa
 create mode 100644 pyfastaq/tests/data/test_acgtn_only.in.fa

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