[med-svn] [sra-sdk] 03/04: DEP3

[Andreas Tille]

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tille pushed a commit to branch master
in repository sra-sdk.

commit c502d0845b66e34dea7f9a3309cab6597ca70447
Author: Andreas Tille <tille at debian.org>
Date:   Thu Sep 1 15:10:01 2016 +0200

    DEP3
---
 debian/patches/dont_use_static_lib.patch           | 4 ++++
 debian/patches/find_hdf5_serial.patch              | 4 ++++
 debian/patches/find_ncbi-vdb.patch                 | 4 ++++
 debian/patches/find_ngs-sdk.patch                  | 4 ++++
 debian/patches/fix_tests.patch                     | 5 +++++
 debian/patches/link_debian_packaged_lmagic.patch   | 4 ++++
 debian/patches/set_explicit_path_to_schemata.patch | 4 ++++
 7 files changed, 29 insertions(+)

diff --git a/debian/patches/dont_use_static_lib.patch b/debian/patches/dont_use_static_lib.patch
index 603a847..ccbd1e3 100644
--- a/debian/patches/dont_use_static_lib.patch
+++ b/debian/patches/dont_use_static_lib.patch
@@ -1,3 +1,7 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 06 Jun 2016 11:24:46 +0200
+Description: Don't use static library
+
 --- a/test/fuse/Makefile
 +++ b/test/fuse/Makefile
 @@ -52,7 +52,7 @@ REMOTE_FUSER_TEST_OBJ = \
diff --git a/debian/patches/find_hdf5_serial.patch b/debian/patches/find_hdf5_serial.patch
index dc8769d..04f21e8 100644
--- a/debian/patches/find_hdf5_serial.patch
+++ b/debian/patches/find_hdf5_serial.patch
@@ -1,3 +1,7 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 06 Jun 2016 11:24:46 +0200
+Description: Debian has several flavours of hdf5 - use serial here
+
 --- a/setup/konfigure.perl
 +++ b/setup/konfigure.perl
 @@ -1485,7 +1485,7 @@ sub check_compiler {
diff --git a/debian/patches/find_ncbi-vdb.patch b/debian/patches/find_ncbi-vdb.patch
index 74c249d..a0c201e 100644
--- a/debian/patches/find_ncbi-vdb.patch
+++ b/debian/patches/find_ncbi-vdb.patch
@@ -1,3 +1,7 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 06 Jun 2016 11:24:46 +0200
+Description: Make sure libncbi-vdb will be found
+
 --- a/setup/package.prl
 +++ b/setup/package.prl
 @@ -33,10 +33,10 @@ sub REQ { (
diff --git a/debian/patches/find_ngs-sdk.patch b/debian/patches/find_ngs-sdk.patch
index 2645695..708bdd5 100644
--- a/debian/patches/find_ngs-sdk.patch
+++ b/debian/patches/find_ngs-sdk.patch
@@ -1,3 +1,7 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 06 Jun 2016 11:24:46 +0200
+Description: ngs-sdk header files are in /usr/include
+
 --- a/setup/konfigure.perl
 +++ b/setup/konfigure.perl
 @@ -435,6 +435,7 @@ if ($TOOLS =~ /gcc$/) {
diff --git a/debian/patches/fix_tests.patch b/debian/patches/fix_tests.patch
index e9194b9..096f79c 100644
--- a/debian/patches/fix_tests.patch
+++ b/debian/patches/fix_tests.patch
@@ -1,3 +1,8 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 06 Jun 2016 11:24:46 +0200
+Description: ncbi is not installed in /root/ncbi so this test would fail ... skipping
+ No idea at what place VDB_INCDIR is really used.
+
 --- a/test/fastq-loader/Makefile
 +++ b/test/fastq-loader/Makefile
 @@ -89,11 +89,11 @@ tfl:
diff --git a/debian/patches/link_debian_packaged_lmagic.patch b/debian/patches/link_debian_packaged_lmagic.patch
index 274ec94..e0b7e15 100644
--- a/debian/patches/link_debian_packaged_lmagic.patch
+++ b/debian/patches/link_debian_packaged_lmagic.patch
@@ -1,3 +1,7 @@
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Thu, 21 Jul 2016 14:19:27 +0200
+Description: link against Debian packages libmagic
+
 --- a/tools/copycat/Makefile
 +++ b/tools/copycat/Makefile
 @@ -92,7 +92,7 @@ COPYCAT_LIB = \
diff --git a/debian/patches/set_explicit_path_to_schemata.patch b/debian/patches/set_explicit_path_to_schemata.patch
index 3b0817e..cd93661 100644
--- a/debian/patches/set_explicit_path_to_schemata.patch
+++ b/debian/patches/set_explicit_path_to_schemata.patch
@@ -1,3 +1,7 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 06 Jun 2016 11:24:46 +0200
+Description: In Debian */*.vschema is installed to /usr/lib/ncbi-vdb/
+
 --- a/test/fastq-loader/test-fastq-loader.cpp
 +++ b/test/fastq-loader/test-fastq-loader.cpp
 @@ -146,7 +146,7 @@ public:

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