[med-svn] [rapmap] 02/02: Add copyright and doc
Andreas Tille
tille at debian.org
Wed Sep 7 06:54:01 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository rapmap.
commit 78ad7c811863b2d593801715a84048e122e7a0a9
Author: Andreas Tille <tille at debian.org>
Date: Wed Sep 7 08:48:33 2016 +0200
Add copyright and doc
---
debian/control | 3 +-
debian/copyright | 137 +++++++++++++++++++++++++++++++++++++++++++++++++++++--
debian/docs | 1 +
debian/rules | 17 ++-----
4 files changed, 139 insertions(+), 19 deletions(-)
diff --git a/debian/control b/debian/control
index 014ebb5..3516ede 100644
--- a/debian/control
+++ b/debian/control
@@ -13,7 +13,8 @@ Build-Depends: debhelper (>= 9),
libsparsehash-dev,
libspdlog-dev,
libtclap-dev,
- pkg-config
+ pkg-config,
+ python-markdown
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/rapmap.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/rapmap.git
diff --git a/debian/copyright b/debian/copyright
index 6923fe6..d08a116 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -6,9 +6,138 @@ Files-Excluded: */external
*/include/tclap
Files: *
-Copyright: © 20xx-20yy <upstream>
-License: <license>
+Copyright: 2014-2016 COMputational BIology and Network Evolution lab
+License: GPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ On Debian systems you can find a full copy of the GNU General Public
+ License version 3 at /usr/share/common-licenses/GPL-3.
+Comment: Since RapMap uses Jellyfish, it must be released under the GPL.
+ However, this is currently the only GPL dependency. If it can be
+ replaced, I'd like to re-license RapMap under the BSD license. I'd be
+ happy to accept pull-requests that replace the Jellyfish components
+ with a library released under a more liberal license (BSD-compatible
+
+Files: src/EnumCoderTest.cpp
+ src/EnumCoder.cpp
+ src/UtilTest.cpp
+ include/EnumCoder.hpp
+ include/Util.hpp
+ include/Const.hpp
+ include/Type.hpp
+Copyright: 2012-2016 Daisuke Okanohara
+License: BSD-3-clause
+
+Files: include/xxhash.h
+ src/xxhash.c
+Copyright: 2012-2015, Yann Collet.
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above
+ copyright notice, this list of conditions and the following disclaimer
+ in the documentation and/or other materials provided with the
+ distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+Files: include/macros.h
+ include/rank9b.h
+ src/rank9b.cpp
+Copyright: 2007-2013 Sebastiano Vigna
+License: LGPL-3+
+ This library is free software; you can redistribute it and/or modify it
+ under the terms of the GNU Lesser General Public License as published by the Free
+ Software Foundation; either version 3 of the License, or (at your option)
+ any later version.
+ .
+ This library is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
+ or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
+ for more details.
+ .
+ On Debian systems you can find a full copy of the GNU Lesser General Public
+ License version 3 at /usr/share/common-licenses/LGPL-3.
+
+Files: include/kseq.h
+Copyright: 2008-2011 Attractive Chaos <attractor at live.co.uk>
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining
+ a copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be
+ included in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+ BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+ ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
+
+Files: include/btree/*
+Copyright: 2013 Google Inc. All Rights Reserved.
+License: Apache-2.0
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy of the License at
+ .
+ http://www.apache.org/licenses/LICENSE-2.0
+ .
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+ .
+ On Debian systems you can find a full copy of the Apache-2.0 license
+ at /usr/share/common-licenses/Apache-2.0.
+
Files: debian/*
-Copyright: © 2016 maintainername <maintainer at e.mail>
-License: <license>
+Copyright: 2016 Andreas Tille <tille at debian.org>,
+ Sascha Steinbiss <satta at debian.org>
+License: BSD-3-clause
+
+License: BSD-3-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions
+ are met:
+ .
+ 1. Redistributions of source code must retain the above Copyright
+ notice, this list of conditions and the following disclaimer.
+ 2. Redistributions in binary form must reproduce the above Copyright
+ notice, this list of conditions and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+ 3. Neither the name of the authors nor the names of its contributors
+ may be used to endorse or promote products derived from this
+ software without specific prior written permission.
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..daa30a3
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1 @@
+README.html
diff --git a/debian/rules b/debian/rules
index 9dad43d..01663be 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,20 +1,6 @@
#!/usr/bin/make -f
# DH_VERBOSE := 1
-export LC_ALL=C.UTF-8
-
-# some helpful variables - uncomment them if needed
-# shamelessly stolen from http://jmtd.net/log/awk/
-#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
-#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
-#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
-#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
-#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
-#GIT_TAG := $(subst ~,_,$(VERSION))
-
-# alternatively to manually set those variables, you can
-# include /usr/share/dpkg/default.mk
-# and use what is set there.
# for hardening you might like to uncomment this:
# export DEB_BUILD_MAINT_OPTIONS=hardening=+all
@@ -25,3 +11,6 @@ export LC_ALL=C.UTF-8
override_dh_auto_configure:
dh_auto_configure -- -DJELLYFISH_ROOT=/usr
+override_dh_auto_build:
+ dh_auto_build
+ markdown_py -f README.html README.md
--
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