[med-svn] [salmon] 02/03: fix test suite

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch master
in repository salmon.

commit 1dcbcd2eaba0a906590a15d59c36c4a5fdd94cd5
Author: Sascha Steinbiss <satta at debian.org>
Date:   Sat Sep 10 11:33:05 2016 +0000

    fix test suite
---
 debian/patches/fix-unittest.patch | 11 +++++++++++
 debian/patches/series             |  1 +
 2 files changed, 12 insertions(+)

diff --git a/debian/patches/fix-unittest.patch b/debian/patches/fix-unittest.patch
new file mode 100644
index 0000000..2be00d5
--- /dev/null
+++ b/debian/patches/fix-unittest.patch
@@ -0,0 +1,11 @@
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -236,7 +236,7 @@
+ )
+ 
+ include(InstallRequiredSystemLibraries)
+-add_test( NAME unit_tests COMMAND ${CMAKE_COMMAND} -DTOPLEVEL_DIR=${CMAKE_INSTALL_PREFIX} -P ${GAT_SOURCE_DIR}/cmake/UnitTests.cmake )
++add_test( NAME unit_tests COMMAND ${CMAKE_COMMAND} -DTOPLEVEL_DIR=${GAT_SOURCE_DIR} -P ${GAT_SOURCE_DIR}/cmake/UnitTests.cmake )
+ add_test( NAME salmon_read_test_fmd COMMAND ${CMAKE_COMMAND} -DTOPLEVEL_DIR=${GAT_SOURCE_DIR} -P ${GAT_SOURCE_DIR}/cmake/TestSalmonFMD.cmake )
+ add_test( NAME salmon_read_test_quasi COMMAND ${CMAKE_COMMAND} -DTOPLEVEL_DIR=${GAT_SOURCE_DIR} -P ${GAT_SOURCE_DIR}/cmake/TestSalmonQuasi.cmake )
+ 
diff --git a/debian/patches/series b/debian/patches/series
index c519d7b..1f2bcd1 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -7,3 +7,4 @@ use-system-pkg-config-tbb
 0009-Remove-FIND_PACKAGE-for-liblzma-and-libbz2.patch
 use_debian_packaged_rapmap.patch
 add_MEM_F_SELF_OVLP.patch
+fix-unittest.patch

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/salmon.git