[med-svn] [crac] 04/04: Merge tag 'upstream/2.5.0+dfsg'
Andreas Tille
tille at debian.org
Sat Sep 10 22:04:31 UTC 2016
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tille pushed a commit to branch master
in repository crac.
commit e0c393e03b746b76cf7296f004d279dc73d81faf
Merge: 93f464c 5a048c1
Author: Andreas Tille <tille at debian.org>
Date: Sun Sep 11 00:04:21 2016 +0200
Merge tag 'upstream/2.5.0+dfsg'
Upstream version 2.5.0+dfsg
src/libJellyfish-2.0/HalfLICENSE | 34 -
src/libJellyfish-2.0/LICENSE | 674 -
src/libJellyfish-2.0/Makefile.am | 206 -
src/libJellyfish-2.0/Makefile.in | 1410 --
src/libJellyfish-2.0/README | 98 -
src/libJellyfish-2.0/aclocal.m4 | 1369 --
src/libJellyfish-2.0/compile | 347 -
src/libJellyfish-2.0/config.guess | 1420 --
src/libJellyfish-2.0/config.h.in | 89 -
src/libJellyfish-2.0/config.sub | 1794 --
src/libJellyfish-2.0/configure | 18411 -----------------
src/libJellyfish-2.0/configure.ac | 100 -
src/libJellyfish-2.0/depcomp | 791 -
src/libJellyfish-2.0/doc/jellyfish.man | 647 -
src/libJellyfish-2.0/doc/jellyfish.pdf | Bin 242134 -> 0 bytes
src/libJellyfish-2.0/gtest.mk | 18 -
.../include/jellyfish/allocators_mmap.hpp | 78 -
.../include/jellyfish/atomic_bits_array.hpp | 196 -
.../include/jellyfish/atomic_field.hpp | 157 -
.../include/jellyfish/atomic_gcc.hpp | 68 -
.../include/jellyfish/backtrace.hpp | 18 -
.../include/jellyfish/binary_dumper.hpp | 224 -
.../include/jellyfish/bloom_common.hpp | 129 -
.../include/jellyfish/bloom_counter2.hpp | 221 -
.../include/jellyfish/bloom_filter.hpp | 164 -
.../include/jellyfish/circular_buffer.hpp | 200 -
.../include/jellyfish/compare_and_swap.hpp | 80 -
.../include/jellyfish/cooperative_pool.hpp | 258 -
.../include/jellyfish/cooperative_pool2.hpp | 283 -
.../include/jellyfish/cpp_array.hpp | 156 -
src/libJellyfish-2.0/include/jellyfish/divisor.hpp | 150 -
src/libJellyfish-2.0/include/jellyfish/dumper.hpp | 103 -
src/libJellyfish-2.0/include/jellyfish/err.hpp | 133 -
.../include/jellyfish/file_header.hpp | 112 -
.../include/jellyfish/generator_manager.hpp | 163 -
.../include/jellyfish/generic_file_header.hpp | 255 -
.../include/jellyfish/hash_counter.hpp | 244 -
src/libJellyfish-2.0/include/jellyfish/int128.hpp | 203 -
.../include/jellyfish/jellyfish.hpp | 42 -
src/libJellyfish-2.0/include/jellyfish/json.h | 1855 --
.../include/jellyfish/large_hash_array.hpp | 994 -
.../include/jellyfish/large_hash_iterator.hpp | 260 -
.../include/jellyfish/locks_pthread.hpp | 211 -
.../include/jellyfish/mapped_file.hpp | 220 -
src/libJellyfish-2.0/include/jellyfish/mer_dna.hpp | 729 -
.../include/jellyfish/mer_dna_bloom_counter.hpp | 50 -
.../include/jellyfish/mer_heap.hpp | 115 -
.../include/jellyfish/mer_iterator.hpp | 100 -
.../jellyfish/mer_overlap_sequence_parser.hpp | 279 -
.../include/jellyfish/mer_qual_iterator.hpp | 118 -
src/libJellyfish-2.0/include/jellyfish/misc.hpp | 247 -
.../include/jellyfish/offsets_key_value.hpp | 277 -
.../jellyfish/rectangular_binary_matrix.hpp | 379 -
.../include/jellyfish/simple_circular_buffer.hpp | 134 -
.../include/jellyfish/sorted_dumper.hpp | 115 -
.../include/jellyfish/stdio_filebuf.hpp | 170 -
src/libJellyfish-2.0/include/jellyfish/storage.hpp | 37 -
.../include/jellyfish/stream_iterator.hpp | 90 -
.../include/jellyfish/stream_manager.hpp | 158 -
.../include/jellyfish/text_dumper.hpp | 88 -
.../include/jellyfish/thread_exec.hpp | 53 -
src/libJellyfish-2.0/include/jellyfish/time.hpp | 92 -
.../include/jellyfish/token_ring.hpp | 87 -
.../include/jellyfish/whole_sequence_parser.hpp | 150 -
src/libJellyfish-2.0/install-sh | 527 -
src/libJellyfish-2.0/jellyfish-2.0.pc.in | 10 -
src/libJellyfish-2.0/jellyfish/dbg.hpp | 153 -
src/libJellyfish-2.0/jellyfish/fstream_default.hpp | 68 -
src/libJellyfish-2.0/jellyfish/merge_files.hpp | 30 -
src/libJellyfish-2.0/jellyfish/randomc.h | 198 -
src/libJellyfish-2.0/lib/allocators_mmap.cc | 114 -
src/libJellyfish-2.0/lib/err.cc | 31 -
src/libJellyfish-2.0/lib/generator_manager.cc | 282 -
src/libJellyfish-2.0/lib/int128.cc | 94 -
src/libJellyfish-2.0/lib/jsoncpp.cpp | 4230 ----
src/libJellyfish-2.0/lib/mer_dna.cc | 23 -
src/libJellyfish-2.0/lib/misc.cc | 102 -
.../lib/rectangular_binary_matrix.cc | 216 -
src/libJellyfish-2.0/lib/storage.cc | 51 -
src/libJellyfish-2.0/lib/thread_exec.cc | 44 -
src/libJellyfish-2.0/lib/time.cc | 19 -
src/libJellyfish-2.0/ltmain.sh | 9661 ---------
src/libJellyfish-2.0/m4/libtool.m4 | 7997 --------
src/libJellyfish-2.0/m4/ltoptions.m4 | 384 -
src/libJellyfish-2.0/m4/ltsugar.m4 | 123 -
src/libJellyfish-2.0/m4/ltversion.m4 | 23 -
src/libJellyfish-2.0/m4/lt~obsolete.m4 | 98 -
src/libJellyfish-2.0/missing | 215 -
src/libJellyfish-2.0/unit_tests/gtest/gtest.h | 20061 -------------------
.../unit_tests/gtest/src/gtest-all.cc | 9592 ---------
.../unit_tests/gtest/src/gtest_main.cc | 38 -
src/libgzstream/COPYING.LIB | 504 -
src/libgzstream/Makefile.am | 107 -
src/libgzstream/Makefile.in | 709 -
src/libgzstream/README | 6 -
src/libgzstream/gzstream.cpp | 165 -
src/libgzstream/gzstream.h | 121 -
97 files changed, 94049 deletions(-)
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