[med-svn] r22780 - in trunk/packages/rostlab/profphd/trunk/debian: . tests

[Tatiana Malygina]

Author: latticetower-guest
Date: 2016-09-11 01:52:06 +0000 (Sun, 11 Sep 2016)
New Revision: 22780

Modified:
   trunk/packages/rostlab/profphd/trunk/debian/changelog
   trunk/packages/rostlab/profphd/trunk/debian/tests/profphd-install-test
Log:
update comments in debian/tests/profphd-install-test

Modified: trunk/packages/rostlab/profphd/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/profphd/trunk/debian/changelog	2016-09-11 01:46:52 UTC (rev 22779)
+++ trunk/packages/rostlab/profphd/trunk/debian/changelog	2016-09-11 01:52:06 UTC (rev 22780)
@@ -6,10 +6,10 @@
   * add hardening in d/rules
   * add patches 1-4 to use latest perl 5.22 (UNFINISHED! checking if this works) 
   * add debian/tests (unfinished too)
-  * fix in patches/3_fix_indexing.patch (I think I managed to reproduce the 
-    reason of error), add patch 5_fix_regex_warning.patch,
-    move working portion of tests from test-install.pl script to 
-    tests/profphd-install-test
+  * remove autopkgtest-perl commands - they actually do nothing - and replaced 
+    them with syntax check for all .pm files inside src dir (which is run with 
+    command 'perl -c <name>.pm')
+  * update comments in debian/tests/profphd-install-test
 
  -- Tatiana Malygina <merlettaia at gmail.com>  Fri, 08 Jul 2016 22:46:36 +0300
 

Modified: trunk/packages/rostlab/profphd/trunk/debian/tests/profphd-install-test
===================================================================
--- trunk/packages/rostlab/profphd/trunk/debian/tests/profphd-install-test	2016-09-11 01:46:52 UTC (rev 22779)
+++ trunk/packages/rostlab/profphd/trunk/debian/tests/profphd-install-test	2016-09-11 01:52:06 UTC (rev 22780)
@@ -1,7 +1,9 @@
 #!/bin/sh
 # autopkgtest check: build and run with default test data
-# This test is similar to installation test, yet it differs: it loads tests commands
-# from current version of test-install.pl and checks the results.
+# This test is similar to installation-test, yet it differs: it loads tests 
+# commands from current version of upstream's src/scr/test-install.pl and 
+# checks the results (only loads tests with all example files present, tests 
+# which are not working because of no files are commented).
 # Author: Tatiana Malygina <merlettaia at gmail.com>
 
 set -e
@@ -22,19 +24,14 @@
     rm $lnk
 done
 
-
 prof 1ppt.hssp fileRdb=tst-1ppt.rdbProfSec sec ascii
 [ -z $(cmp -s tst-1ppt.rdbProfSec 1ppt.hssp.prof) ]
-#Useless use of greediness modifier '?' in regex; marked by <-- HERE in m/^(.{59}? <-- HERE \S*[\., \-\;\:])/ at /usr/share/profphd/prof/scr/lib/lib-profwrt.pl line 2303.
 prof 1ppt.hssp fileRdb=tst-1ppt.rdbProfAcc acc ascii
 [ -s tst-1ppt.rdbProfAcc ]
-#Useless use of greediness modifier '?' in regex; marked by <-- HERE in m/^(.{59}? <-- HERE \S*[\., \-\;\:])/ at /usr/share/profphd/prof/scr/lib/lib-profwrt.pl line 2303.
 prof 1ppt.hssp fileRdb=tst-1ppt.rdbProfBoth both ascii
 [ -s tst-1ppt.rdbProfBoth ]
-#Useless use of greediness modifier '?' in regex; marked by <-- HERE in m/^(.{59}? <-- HERE \S*[\., \-\;\:])/ at /usr/share/profphd/prof/scr/lib/lib-profwrt.pl line 2303.
 prof 1ppt.hssp fileRdb=tst-1ppt.rdbProf ascii
 [ -s tst-1ppt.rdbProf ]
-#Useless use of greediness modifier '?' in regex; marked by <-- HERE in m/^(.{59}? <-- HERE \S*[\., \-\;\:])/ at /usr/share/profphd/prof/scr/lib/lib-profwrt.pl line 2303.
 #prof 1prc.hssp_L fileRdb=tst-1prcL.rdbProfSec sec ascii
 #prof 1prc.hssp_L fileRdb=tst-1prcL.rdbProfAcc acc ascii
 #prof 1prc.hssp_L fileRdb=tst-1prcL.rdbProfHtm htm ascii
@@ -42,14 +39,12 @@
 #prof 1shg.hssp fileRdb=tst-1shg.rdbProf both ascii saf fileAli=tst-1shg.profSaf dssp fileDssp=tst-1shg.profDssp
 #prof 1shg.hssp fileRdb=tst-1shg.rdbProfFilter both ascii filter optFilter=red=70 msf fileAli=tst-1shg.profFilterMsf
 #prof 256b.dssp fileRdb=tst-256b.rdbProfSec sec ascii
-echo "next examples"
-#Useless use of greediness modifier '?' in regex; marked by <-- HERE in m/^(.{59}? <-- HERE \S*[\., \-\;\:])/ at /usr/share/profphd/prof/scr/lib/lib-profwrt.pl line 2303.
+
 prof 2ppt.fastamul fileRdb=tst-2ppt.rdbProfSec sec ascii
 [ -z $(cmp -s tst-2ppt.rdbProfSec 2ppt.rdbProfSec) ]
-#Useless use of greediness modifier '?' in regex; marked by <-- HERE in m/^(.{59}? <-- HERE \S*[\., \-\;\:])/ at /usr/share/profphd/prof/scr/lib/lib-profwrt.pl line 2303.
+
 prof 8rnt.msf fileRdb=tst-8rnt.rdbProfSec sec ascii
+# for now above line produces following warnings several times:
 #Redundant argument in printf at /usr/share/perl5/RG/Utils/Copf.pm line 6536.
 #Redundant argument in printf at /usr/share/perl5/RG/Utils/Copf.pm line 6308.
-#Useless use of greediness modifier '?' in regex; marked by <-- HERE in m/^(.{59}? <-- HERE \S*[\., \-\;\:])/ at /usr/share/profphd/prof/scr/lib/lib-profwrt.pl line 2303.
 prof 9rnt.saf fileRdb=tst-9rnt.rdbProfSec sec ascii
-# Useless use of greediness modifier '?' in regex; marked by <-- HERE in m/^(.{59}? <-- HERE \S*[\., \-\;\:])/ at /usr/share/profphd/prof/scr/lib/lib-profwrt.pl line 2303.