[med-svn] [salmon] 02/02: work towards reproducibility by including CXXFLAGS

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository salmon.

commit 5bfbe3f6d6c0d83693a2dffb73be6ef523d6a2d0
Author: Sascha Steinbiss <satta at debian.org>
Date:   Sun Sep 11 13:03:18 2016 +0000

    work towards reproducibility by including CXXFLAGS
---
 debian/patches/reproducible.patch | 11 +++++++++++
 debian/patches/series             |  1 +
 2 files changed, 12 insertions(+)

diff --git a/debian/patches/reproducible.patch b/debian/patches/reproducible.patch
new file mode 100644
index 0000000..0fb6099
--- /dev/null
+++ b/debian/patches/reproducible.patch
@@ -0,0 +1,11 @@
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -27,7 +27,7 @@
+ 
+ ## Set the standard required compile flags
+ # Nov 18th --- removed -DHAVE_CONFIG_H
+-set (CMAKE_CXX_FLAGS "-pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type")
++set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type")
+ 
+ ##
+ # OSX is strange (some might say, stupid in this regard).  Deal with it's quirkines here.
diff --git a/debian/patches/series b/debian/patches/series
index 1f2bcd1..fdd6bb4 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -8,3 +8,4 @@ use-system-pkg-config-tbb
 use_debian_packaged_rapmap.patch
 add_MEM_F_SELF_OVLP.patch
 fix-unittest.patch
+reproducible.patch

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