[med-svn] [crac] branch master updated (f275ba5 -> 8f66f0b)
Andreas Tille
tille at debian.org
Mon Sep 12 13:45:55 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository crac.
from f275ba5 Exclude single failing test
new 23f51de use Debian packaged libGkArrays
new 4139840 Imported Upstream version 2.5.0+dfsg
new 06b9e42 Merge tag 'upstream/2.5.0+dfsg'
new 2e055b3 use_debian_packages_libgtarrays.patch
new 9f322e9 No development package since libgkarrays is packaged separately
new d1059d0 No *.la files any more
new 8f66f0b Drop unneeded crac.install, cleanup crac.docs
The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
debian/control | 28 +-
debian/copyright | 1 +
debian/crac.docs | 3 -
debian/crac.install | 1 -
debian/libcrac-dev.install | 2 -
debian/patches/series | 1 +
.../patches/use_debian_packages_libgtarrays.patch | 50 +
debian/rules | 5 -
src/libGkArrays/AUTHORS | 19 -
src/libGkArrays/COPYING | 1047 -
src/libGkArrays/ChangeLog | 482 -
src/libGkArrays/INSTALL | 365 -
src/libGkArrays/Makefile.am | 191 -
src/libGkArrays/Makefile.in | 1072 -
src/libGkArrays/NEWS | 0
src/libGkArrays/README | 143 -
src/libGkArrays/aclocal.m4 | 1154 --
src/libGkArrays/config/compile | 347 -
src/libGkArrays/config/config.guess | 1530 --
src/libGkArrays/config/config.h.in | 145 -
src/libGkArrays/config/config.sub | 1773 --
src/libGkArrays/config/depcomp | 630 -
src/libGkArrays/config/install-sh | 520 -
src/libGkArrays/config/ltmain.sh | 9661 ---------
src/libGkArrays/config/m4/libtool.m4 | 7851 --------
src/libGkArrays/config/m4/ltoptions.m4 | 369 -
src/libGkArrays/config/m4/ltsugar.m4 | 123 -
src/libGkArrays/config/m4/ltversion.m4 | 23 -
src/libGkArrays/config/m4/lt~obsolete.m4 | 98 -
src/libGkArrays/config/missing | 376 -
src/libGkArrays/config/test-driver | 139 -
src/libGkArrays/config/texinfo.tex | 9291 ---------
src/libGkArrays/configure | 19364 -------------------
src/libGkArrays/configure.ac | 357 -
src/libGkArrays/control.in | 29 -
src/libGkArrays/doc/CeCILL-C.texi | 587 -
src/libGkArrays/doc/Makefile.am | 129 -
src/libGkArrays/doc/Makefile.in | 938 -
src/libGkArrays/doc/libGkArrays.3.in | 184 -
src/libGkArrays/doc/libGkArrays.info | 886 -
src/libGkArrays/doc/libGkArrays.texi | 400 -
src/libGkArrays/doc/package.texi.in | 2 -
src/libGkArrays/doc/texinfo.tex | 9291 ---------
src/libGkArrays/libGkArrays.pc.in | 10 -
src/libGkArrays/postinst.in | 108 -
src/libGkArrays/prerm.in | 108 -
src/libGkArrays/src/Makefile.am | 163 -
src/libGkArrays/src/Makefile.in | 1035 -
src/libGkArrays/src/basic.h | 64 -
src/libGkArrays/src/binvect.hxx | 119 -
src/libGkArrays/src/bitvector.cxx | 465 -
src/libGkArrays/src/bitvector.hxx | 159 -
src/libGkArrays/src/buildTables.cpp | 269 -
src/libGkArrays/src/const.h | 119 -
src/libGkArrays/src/gkArrays.cpp | 636 -
src/libGkArrays/src/gkArrays.h | 477 -
src/libGkArrays/src/gkArraysBuilder.cpp | 160 -
src/libGkArrays/src/gkArraysBuilder.h | 141 -
src/libGkArrays/src/gkArraysTypes.h | 139 -
src/libGkArrays/src/gkCFPSBuilder.cpp | 180 -
src/libGkArrays/src/gkCFPSBuilder.h | 146 -
src/libGkArrays/src/gkIFABuilder.cpp | 202 -
src/libGkArrays/src/gkIFABuilder.h | 154 -
src/libGkArrays/src/gkSABuilder.cpp | 487 -
src/libGkArrays/src/gkSABuilder.h | 242 -
src/libGkArrays/src/kseq/Makefile.am | 113 -
src/libGkArrays/src/kseq/Makefile.in | 675 -
src/libGkArrays/src/kseq/kseq.h | 229 -
src/libGkArrays/src/largebinvect.cxx | 1259 --
src/libGkArrays/src/largebinvect.hxx | 242 -
src/libGkArrays/src/libProgressBar-1.2.0/AUTHORS | 2 -
src/libGkArrays/src/libProgressBar-1.2.0/COPYING | 481 -
src/libGkArrays/src/libProgressBar-1.2.0/ChangeLog | 118 -
src/libGkArrays/src/libProgressBar-1.2.0/INSTALL | 365 -
.../src/libProgressBar-1.2.0/Makefile.am | 124 -
.../src/libProgressBar-1.2.0/Makefile.in | 989 -
src/libGkArrays/src/libProgressBar-1.2.0/NEWS | 0
src/libGkArrays/src/libProgressBar-1.2.0/README | 29 -
.../src/libProgressBar-1.2.0/acinclude.m4 | 40 -
.../src/libProgressBar-1.2.0/aclocal.m4 | 1155 --
src/libGkArrays/src/libProgressBar-1.2.0/compile | 347 -
.../src/libProgressBar-1.2.0/config.guess | 1517 --
.../src/libProgressBar-1.2.0/config.sub | 1760 --
src/libGkArrays/src/libProgressBar-1.2.0/configure | 19343 ------------------
.../src/libProgressBar-1.2.0/configure.in | 101 -
.../src/libProgressBar-1.2.0/control.in | 18 -
src/libGkArrays/src/libProgressBar-1.2.0/depcomp | 630 -
.../src/libProgressBar-1.2.0/doc/Makefile.am | 47 -
.../src/libProgressBar-1.2.0/doc/Makefile.in | 849 -
.../src/libProgressBar-1.2.0/doc/lgpl.texinfo | 190 -
.../src/libProgressBar-1.2.0/doc/libProgressBar.3 | 94 -
.../libProgressBar-1.2.0/doc/libProgressBar.3.in | 94 -
.../libProgressBar-1.2.0/doc/libProgressBar.info | 294 -
.../doc/libProgressBar.texinfo | 165 -
.../src/libProgressBar-1.2.0/doc/texinfo.tex | 9291 ---------
.../src/libProgressBar-1.2.0/install-sh | 520 -
.../src/libProgressBar-1.2.0/libProgressBar.lsm.in | 24 -
.../src/libProgressBar-1.2.0/libProgressBar.pc.in | 10 -
.../libProgressBar-1.2.0/libProgressBar.spec.in | 107 -
.../libProgressBar/Makefile.am | 24 -
.../libProgressBar/Makefile.in | 788 -
.../libProgressBar/config.h.in | 129 -
.../libProgressBar/progressBar.cpp | 191 -
.../libProgressBar/progressBar.h | 269 -
.../libProgressBar-1.2.0/libProgressBar/testPB.cpp | 125 -
src/libGkArrays/src/libProgressBar-1.2.0/ltmain.sh | 9661 ---------
.../src/libProgressBar-1.2.0/m4/libtool.m4 | 7851 --------
.../src/libProgressBar-1.2.0/m4/ltoptions.m4 | 369 -
.../src/libProgressBar-1.2.0/m4/ltsugar.m4 | 123 -
.../src/libProgressBar-1.2.0/m4/ltversion.m4 | 23 -
.../src/libProgressBar-1.2.0/m4/lt~obsolete.m4 | 98 -
src/libGkArrays/src/libProgressBar-1.2.0/missing | 376 -
.../src/libProgressBar-1.2.0/mkinstalldirs | 162 -
.../src/libProgressBar-1.2.0/postinst.in | 4 -
src/libGkArrays/src/libProgressBar-1.2.0/prerm.in | 4 -
src/libGkArrays/src/readsReader.cpp | 405 -
src/libGkArrays/src/readsReader.h | 432 -
src/libGkArrays/src/solArray.cpp | 186 -
src/libGkArrays/src/solArray.h | 260 -
src/libGkArrays/src/sux/COPYING.LIB | 504 -
src/libGkArrays/src/sux/Makefile.am | 113 -
src/libGkArrays/src/sux/Makefile.in | 675 -
src/libGkArrays/src/sux/README | 74 -
src/libGkArrays/src/sux/macros.h | 26 -
src/libGkArrays/src/sux/popcount.h | 15 -
src/libGkArrays/src/sux/rank9b.cpp | 236 -
src/libGkArrays/src/sux/rank9b.h | 89 -
src/libGkArrays/src/utils.cpp | 214 -
src/libGkArrays/src/utils.h | 229 -
src/libGkArrays/tests/Makefile.am | 131 -
src/libGkArrays/tests/Makefile.in | 1150 --
src/libGkArrays/tests/checkConsistency.cpp | 332 -
src/libGkArrays/tests/checkConsistency.h | 139 -
src/libGkArrays/tests/checkPairedEnd.cpp | 146 -
src/libGkArrays/tests/checkPairedEnd.h | 107 -
src/libGkArrays/tests/compareVariableFixed.cpp | 190 -
src/libGkArrays/tests/compareVariableFixed.h | 121 -
src/libGkArrays/tests/dataset/data1.fa | 7 -
src/libGkArrays/tests/dataset/data2.fa | 7 -
src/libGkArrays/tests/dataset/variable.fa | 10 -
src/libGkArrays/tests/testConsistency.cpp | 141 -
src/libGkArrays/tests/testPairedEnd.cpp | 123 -
src/libGkArrays/tests/testVariable.h | 106 -
src/libGkArrays/tests/testVariableFixed.cpp | 118 -
src/libGkArrays/tests/testing.h | 65 -
src/libGkArrays/tests/variableAndFixedLength.cpp | 131 -
146 files changed, 55 insertions(+), 143036 deletions(-)
delete mode 100644 debian/crac.install
delete mode 100644 debian/libcrac-dev.install
create mode 100644 debian/patches/use_debian_packages_libgtarrays.patch
delete mode 100644 src/libGkArrays/AUTHORS
delete mode 100644 src/libGkArrays/COPYING
delete mode 100644 src/libGkArrays/ChangeLog
delete mode 100644 src/libGkArrays/INSTALL
delete mode 100644 src/libGkArrays/Makefile.am
delete mode 100644 src/libGkArrays/Makefile.in
delete mode 100644 src/libGkArrays/NEWS
delete mode 100644 src/libGkArrays/README
delete mode 100644 src/libGkArrays/aclocal.m4
delete mode 100755 src/libGkArrays/config/compile
delete mode 100755 src/libGkArrays/config/config.guess
delete mode 100644 src/libGkArrays/config/config.h.in
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delete mode 100644 src/libGkArrays/doc/CeCILL-C.texi
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delete mode 100644 src/libGkArrays/src/binvect.hxx
delete mode 100644 src/libGkArrays/src/bitvector.cxx
delete mode 100644 src/libGkArrays/src/bitvector.hxx
delete mode 100644 src/libGkArrays/src/buildTables.cpp
delete mode 100644 src/libGkArrays/src/const.h
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delete mode 100644 src/libGkArrays/src/gkArraysBuilder.cpp
delete mode 100644 src/libGkArrays/src/gkArraysBuilder.h
delete mode 100644 src/libGkArrays/src/gkArraysTypes.h
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delete mode 100644 src/libGkArrays/src/libProgressBar-1.2.0/m4/ltoptions.m4
delete mode 100644 src/libGkArrays/src/libProgressBar-1.2.0/m4/ltsugar.m4
delete mode 100644 src/libGkArrays/src/libProgressBar-1.2.0/m4/ltversion.m4
delete mode 100644 src/libGkArrays/src/libProgressBar-1.2.0/m4/lt~obsolete.m4
delete mode 100755 src/libGkArrays/src/libProgressBar-1.2.0/missing
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delete mode 100644 src/libGkArrays/src/libProgressBar-1.2.0/prerm.in
delete mode 100644 src/libGkArrays/src/readsReader.cpp
delete mode 100644 src/libGkArrays/src/readsReader.h
delete mode 100644 src/libGkArrays/src/solArray.cpp
delete mode 100644 src/libGkArrays/src/solArray.h
delete mode 100644 src/libGkArrays/src/sux/COPYING.LIB
delete mode 100644 src/libGkArrays/src/sux/Makefile.am
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delete mode 100644 src/libGkArrays/src/sux/README
delete mode 100644 src/libGkArrays/src/sux/macros.h
delete mode 100644 src/libGkArrays/src/sux/popcount.h
delete mode 100644 src/libGkArrays/src/sux/rank9b.cpp
delete mode 100644 src/libGkArrays/src/sux/rank9b.h
delete mode 100644 src/libGkArrays/src/utils.cpp
delete mode 100644 src/libGkArrays/src/utils.h
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delete mode 100644 src/libGkArrays/tests/variableAndFixedLength.cpp
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