[med-svn] [crac] 05/07: No development package since libgkarrays is packaged separately

Andreas Tille tille at debian.org
Mon Sep 12 13:45:58 UTC 2016


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tille pushed a commit to branch master
in repository crac.

commit 9f322e9e4ac902eebfee4fd7f310c0b438c666ba
Author: Andreas Tille <tille at debian.org>
Date:   Mon Sep 12 15:39:07 2016 +0200

    No development package since libgkarrays is packaged separately
---
 debian/control             | 27 ++-------------------------
 debian/libcrac-dev.install |  2 --
 2 files changed, 2 insertions(+), 27 deletions(-)

diff --git a/debian/control b/debian/control
index b925ba3..7c66865 100644
--- a/debian/control
+++ b/debian/control
@@ -10,7 +10,8 @@ Build-Depends: debhelper (>= 9),
                libhts-dev,
                libjellyfish-2.0-dev,
                libgzstream-dev,
-               libgkarrays-dev
+               libgkarrays-dev,
+               pkg-config
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/crac.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/crac.git
@@ -36,27 +37,3 @@ Description: integrated RNA-Seq read analysis
  CRAC requires about 40 gigabytes of main memory. Check whether the
  system of your computing server is equipped with sufficient amount of
  memory before launching an analysis.
-
-Package: libcrac-dev
-Architecture: any
-Section: libdevel
-Depends: ${shlibs:Depends},
-         ${misc:Depends}
-Description: development library for integrated RNA-Seq read analysis
- CRAC is a tool to analyze High Throughput Sequencing (HTS) data in
- comparison to a reference genome. It is intended for transcriptomic
- and genomic sequencing reads. More precisely, with transcriptomic
- reads as input, it predicts point mutations, indels, splice junction,
- and chimeric RNAs (ie, non colinear splice junctions). CRAC can also
- output positions and nature of sequence error that it detects in the
- reads. CRAC uses a genome index. This index must be computed before
- running the read analysis. For this sake, use the command "crac-index"
- on your genome files. You can then process the reads using the command
- crac. See the man page of CRAC (help file) by typing "man crac". CRAC
- requires large amount of main memory on your computer. For processing
- against the Human genome, say 50 million reads of 100 nucleotide each,
- CRAC requires about 40 gigabytes of main memory. Check whether the
- system of your computing server is equipped with sufficient amount of
- memory before launching an analysis.
- .
- This is the development library for crac,
diff --git a/debian/libcrac-dev.install b/debian/libcrac-dev.install
deleted file mode 100644
index 4418816..0000000
--- a/debian/libcrac-dev.install
+++ /dev/null
@@ -1,2 +0,0 @@
-usr/lib
-usr/include

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