[med-svn] [metaphlan2-data] 03/04: New upstream version 2.6.0+ds

[Andreas Tille]

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tille pushed a commit to branch master
in repository metaphlan2-data.

commit 528a355a92f0df5b404893eebb1dd3e07db16134
Author: Andreas Tille <tille at debian.org>
Date:   Fri Sep 16 22:40:30 2016 +0200

    New upstream version 2.6.0+ds
---
 changeset.txt | 13 +++++++++++++
 license.txt   |  7 +++++++
 2 files changed, 20 insertions(+)

diff --git a/changeset.txt b/changeset.txt
new file mode 100644
index 0000000..02d1341
--- /dev/null
+++ b/changeset.txt
@@ -0,0 +1,13 @@
+== Version 2.2.0
+- added option "marker_counts" (by Nicola)
+
+=== Version 2.1.0
+- added min_alignment_len option to filter out short alignments in local mode. For long reads (>150) it is now recommended to use local mapping together with "--min_alignment_len 100" to filter out very short alignments. (by Tin)
+- added "--samout" option to store the mapping file in SAM format (the SAM will be compressed if the extension of the specified output file ends with ".bz2") (by Tin)
+- fix: MetaPhlAn2 now ingores about ~300 markers that were a-specific (thanks to Eric)
+
+=== Version 2.0.0
+- fix: Biom >= 2.0.0 has the clade IDs second and the sample ids third'
+- added extract_markers.py
+- fix: #5; revamp biom generation; set clade IDs as enumeration
+- added utils/metaphlan2krona.py
diff --git a/license.txt b/license.txt
new file mode 100644
index 0000000..1596b63
--- /dev/null
+++ b/license.txt
@@ -0,0 +1,7 @@
+Copyright (c) 2015, Duy Tin Truong, Nicola Segata and Curtis Huttenhower
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

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