[med-svn] [gmap] branch master updated (78d7476 -> 6415ea0)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository gmap.

      from  78d7476   Update changelog, upload to unstable
       new  5ad0536   New upstream version 2016-09-14
       new  6c1307f   Merge tag 'upstream/2016-09-14'
       new  6415ea0   Update changelog, upload to unstable

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog            |  90 +++++
 VERSION              |   2 +-
 configure            |  24 +-
 debian/changelog     |   6 +
 src/bitpack64-incr.c |   6 +-
 src/dynprog_genome.c | 225 ++++++-------
 src/gmap.c           |  34 +-
 src/gsnap.c          |  32 +-
 src/indel.c          |   8 +-
 src/indexdb.c        |  14 +-
 src/indexdb.h        |   4 +-
 src/sarray-read.c    | 266 +++++++++------
 src/splice.c         | 805 +++++++++++++++++++++++++++++++++++++++++++-
 src/splice.h         |  12 +-
 src/stage1hr.c       | 932 +++++++++++++++++++++++++++------------------------
 src/stage3.c         | 304 ++++++++++++++++-
 src/stage3hr.c       | 408 +++++++++++++++-------
 src/stage3hr.h       |   8 +-
 src/substring.c      | 925 ++++++++++----------------------------------------
 src/substring.h      |  14 +-
 src/uniqscan.c       |  30 +-
 21 files changed, 2514 insertions(+), 1635 deletions(-)

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