[med-svn] [gmap] branch master updated (6415ea0 -> 34b2012)

[Alex Mestiashvili]

This is an automated email from the git hooks/post-receive script.

malex-guest pushed a change to branch master
in repository gmap.

      from  6415ea0   Update changelog, upload to unstable
       new  81426f0   New upstream version 2016-09-23
       new  75987c7   Merge tag 'upstream/2016-09-23'
       new  34b2012   Update changelog, upload to unstable

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog            |   80 +++
 VERSION              |    2 +-
 configure            |   24 +-
 debian/changelog     |    6 +
 src/Makefile.am      |    2 +-
 src/Makefile.in      |  106 ++-
 src/access.c         |    5 +-
 src/boyer-moore.c    |    3 +-
 src/dynprog_genome.c |  794 +++++----------------
 src/pair.c           |   31 +-
 src/samprint.c       |   13 +-
 src/splice.c         |   51 +-
 src/splice.h         |    6 +-
 src/stage1.c         |    8 +-
 src/stage1hr.c       |   87 ++-
 src/stage2.c         |  134 +++-
 src/stage3.c         | 1886 +++++++++++++++++++++++++++++++++++++++-----------
 src/stage3.h         |    4 +-
 src/stage3hr.c       |  260 +++++--
 src/stage3hr.h       |    4 +-
 src/substring.c      |  110 +--
 src/substring.h      |    6 +-
 22 files changed, 2393 insertions(+), 1229 deletions(-)

-- 
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