[med-svn] [seqsero] 01/02: Go without isPcr for the moment
Andreas Tille
tille at debian.org
Tue Apr 4 12:52:54 UTC 2017
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tille pushed a commit to branch master
in repository seqsero.
commit 1d1eb443c921992fcf480858e8fd0b0d631dc640
Author: Andreas Tille <tille at debian.org>
Date: Tue Apr 4 14:51:14 2017 +0200
Go without isPcr for the moment
---
debian/README.Debian | 19 +++++++++++++++++++
debian/changelog | 2 --
debian/control | 1 +
3 files changed, 20 insertions(+), 2 deletions(-)
diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..a9f8811
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,19 @@
+SeqSero for Debian
+==================
+
+Upstream lists
+
+ isPcr (http://hgwdev.cse.ucsc.edu/~kent/exe/linux/) written by Jim Kent
+
+as dependency but tests have shown that it also works without the
+isPcr33 executable that was shipped without source. Due to this
+experience we set ispcr as "Suggests". If a user might observe any
+constraint please file this as a bug report - most favourably after
+asking Jim Kent for the source code of this program.
+
+It might be that the source somehow can be found at
+ https://github.com/ENCODE-DCC/kentUtils.git
+but it is not really clear how and what license it might have
+
+ -- Andreas Tille <tille at debian.org> Wed, 15 Feb 2017 09:17:30 +0100
+
diff --git a/debian/changelog b/debian/changelog
index ca8214b..14dc934 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -5,8 +5,6 @@ seqsero (1.0-1) UNRELEASED; urgency=medium
- See whether upstream will add release tags
https://github.com/denglab/SeqSero/issues/2
otherwise fix get-orig-source
- - Find source code of isPcr33. Seems to be connected with
- https://github.com/ENCODE-DCC/kentUtils.git
-- Andreas Tille <tille at debian.org> Wed, 15 Feb 2017 09:17:30 +0100
diff --git a/debian/control b/debian/control
index c9be3fe..4d840a9 100644
--- a/debian/control
+++ b/debian/control
@@ -19,6 +19,7 @@ Depends: ${python:Depends},
bwa,
samtools,
sra-toolkit
+Suggests: ispcr
Description: Salmonella serotyping from genome sequencing data
SeqSero is a pipeline for Salmonella serotype determination from raw
sequencing reads or genome assemblies.
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