[med-svn] [seqsero] 01/02: Go without isPcr for the moment

[Andreas Tille]

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tille pushed a commit to branch master
in repository seqsero.

commit 1d1eb443c921992fcf480858e8fd0b0d631dc640
Author: Andreas Tille <tille at debian.org>
Date:   Tue Apr 4 14:51:14 2017 +0200

    Go without isPcr for the moment
---
 debian/README.Debian | 19 +++++++++++++++++++
 debian/changelog     |  2 --
 debian/control       |  1 +
 3 files changed, 20 insertions(+), 2 deletions(-)

diff --git a/debian/README.Debian b/debian/README.Debian
new file mode 100644
index 0000000..a9f8811
--- /dev/null
+++ b/debian/README.Debian
@@ -0,0 +1,19 @@
+SeqSero for Debian
+==================
+
+Upstream lists
+
+   isPcr (http://hgwdev.cse.ucsc.edu/~kent/exe/linux/) written by Jim Kent
+
+as dependency but tests have shown that it also works without the
+isPcr33 executable that was shipped without source.  Due to this
+experience we set ispcr as "Suggests".  If a user might observe any
+constraint please file this as a bug report - most favourably after
+asking Jim Kent for the source code of this program.
+
+It might be that the source somehow can be found at
+       https://github.com/ENCODE-DCC/kentUtils.git
+but it is not really clear how and what license it might have
+
+ -- Andreas Tille <tille at debian.org>  Wed, 15 Feb 2017 09:17:30 +0100
+
diff --git a/debian/changelog b/debian/changelog
index ca8214b..14dc934 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -5,8 +5,6 @@ seqsero (1.0-1) UNRELEASED; urgency=medium
      - See whether upstream will add release tags
        https://github.com/denglab/SeqSero/issues/2
        otherwise fix get-orig-source
-     - Find source code of isPcr33.  Seems to be connected with
-       https://github.com/ENCODE-DCC/kentUtils.git
 
  -- Andreas Tille <tille at debian.org>  Wed, 15 Feb 2017 09:17:30 +0100
 
diff --git a/debian/control b/debian/control
index c9be3fe..4d840a9 100644
--- a/debian/control
+++ b/debian/control
@@ -19,6 +19,7 @@ Depends: ${python:Depends},
          bwa,
          samtools,
          sra-toolkit
+Suggests: ispcr
 Description: Salmonella serotyping from genome sequencing data
  SeqSero is a pipeline for Salmonella serotype determination from raw
  sequencing reads or genome assemblies.

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