[med-svn] [libbiod] 01/01: Fix conversion issue on i386

[Andreas Tille]

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tille pushed a commit to branch master
in repository libbiod.

commit a45074af9817179477dcc5ff1900eb3d08a25ac9
Author: Andreas Tille <tille at debian.org>
Date:   Mon Apr 10 09:57:42 2017 +0200

    Fix conversion issue on i386
---
 debian/changelog                              |  8 ++++++++
 debian/patches/0016-fix-type-conversion.patch | 15 +++++++++++++++
 debian/patches/series                         |  1 +
 3 files changed, 24 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 3cefa2f..9e8cae4 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,11 @@
+libbiod (0.1.0-3) unstable; urgency=medium
+
+  * Fix conversion issue on i386 (thanks for the patch to Matthias Klumpp
+    <mak at debian.org>)
+    Closes: #859688
+
+ -- Andreas Tille <tille at debian.org>  Mon, 10 Apr 2017 09:57:27 +0200
+
 libbiod (0.1.0-2) unstable; urgency=medium
 
   * Add missing Depends: libbiod0 (= ${binary:Version})
diff --git a/debian/patches/0016-fix-type-conversion.patch b/debian/patches/0016-fix-type-conversion.patch
new file mode 100644
index 0000000..23bb19d
--- /dev/null
+++ b/debian/patches/0016-fix-type-conversion.patch
@@ -0,0 +1,15 @@
+Author: Matthias Klumpp <mak at debian.org>
+Last-Update: Mon, 10 Apr 2017 03:49:19 +0200
+Bug-Debian: https://bugs.debian.org/859688
+Description: undead.stream uses ulong instead of size_t for positions,
+ so we do that too here to be compatible
+
+--- a/bio/sff/read.d
++++ b/bio/sff/read.d
+@@ -22,5 +22,5 @@ struct SffRead {
+     ushort clip_adapter_right;
+ 
+     /// Record start offset in the file
+-    size_t file_offset;
++    ulong file_offset; // undead.stream uses ulong instead of size_t for positions, so we do that too here to be compatible
+ }
diff --git a/debian/patches/series b/debian/patches/series
index 39a52ce..ce8302a 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -11,3 +11,4 @@
 0013-fix-toJSON-usage-for-new-and-old-compilers.patch
 0014-Add-compareCoordinatesAndStrand-to-fix-sorting-test-.patch
 0015-Add-Meson-build-definition.patch
+0016-fix-type-conversion.patch

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