[med-svn] [hmmer2] 07/09: Merge tag 'upstream/2.3.2+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository hmmer2.

commit b12ff70a57bc9d27bbbea513f73ae2e33e08b073
Merge: 610e469 c71b80a
Author: Andreas Tille <tille at debian.org>
Date:   Tue Apr 11 17:27:02 2017 +0200

    Merge tag 'upstream/2.3.2+dfsg'
    
    Upstream version 2.3.2+dfsg

 squid/00README                     |   39 -
 squid/Makefile.in                  |  314 --
 squid/Testsuite/00README           |   21 -
 squid/Testsuite/Makefile.in        |   90 -
 squid/Testsuite/bug-1-sfetch-paths |   29 -
 squid/Testsuite/iospeed_main.c     |   88 -
 squid/Testsuite/rndspeed_main.c    |   41 -
 squid/Testsuite/sqdconfig_main.c   |   33 -
 squid/Testsuite/testsuite.pm       |   44 -
 squid/Testsuite/x-base-afetch      |   11 -
 squid/Testsuite/x-base-alistat     |   14 -
 squid/Testsuite/x-base-seqstat     |   22 -
 squid/Testsuite/x-base-sfetch      |    9 -
 squid/Testsuite/x-base-shuffle     |    7 -
 squid/Testsuite/x-base-sindex      |   21 -
 squid/Testsuite/x-base-sreformat   |   13 -
 squid/a2m.c                        |  115 -
 squid/afetch_main.c                |  184 -
 squid/aligneval.c                  |  510 ---
 squid/alignio.c                    |  642 ---
 squid/alistat_main.c               |  275 --
 squid/clustal.c                    |  181 -
 squid/cluster.c                    |  542 ---
 squid/compalign_main.c             |  223 -
 squid/compstruct_main.c            |  323 --
 squid/config.sub                   | 1375 ------
 squid/configure                    | 8042 ------------------------------------
 squid/dayhoff.c                    |  173 -
 squid/eps.c                        |  118 -
 squid/file.c                       |  274 --
 squid/getopt.c                     |  253 --
 squid/gki.c                        |  390 --
 squid/gki.h                        |   51 -
 squid/gsi.c                        |  387 --
 squid/gsi.h                        |   85 -
 squid/gsi64.c                      |  397 --
 squid/gsi64.h                      |  101 -
 squid/hsregex.c                    | 1361 ------
 squid/install-sh                   |  251 --
 squid/iupac.c                      |  221 -
 squid/msa.c                        | 1440 -------
 squid/msa.h                        |  298 --
 squid/msf.c                        |  391 --
 squid/phylip.c                     |  176 -
 squid/revcomp.c                    |   90 -
 squid/revcomp_main.c               |  108 -
 squid/rk.c                         |  132 -
 squid/rk.h                         |   40 -
 squid/selex.c                      |  828 ----
 squid/seqencode.c                  |  176 -
 squid/seqsplit_main.c              |  277 --
 squid/seqstat_main.c               |  238 --
 squid/sfetch_main.c                |  464 ---
 squid/shuffle.c                    |  641 ---
 squid/shuffle_main.c               |  336 --
 squid/sindex_main.c                |  219 -
 squid/sqerror.c                    |   94 -
 squid/sqfuncs.h                    |  272 --
 squid/sqio.c                       | 1933 ---------
 squid/squid.h.in                   |  475 ---
 squid/squidconf.h.in               |  122 -
 squid/squidcore.c                  |   55 -
 squid/sre_ctype.c                  |   37 -
 squid/sre_math.c                   |  334 --
 squid/sre_random.c                 |  315 --
 squid/sre_random.h                 |   18 -
 squid/sre_string.c                 |  527 ---
 squid/sreformat_main.c             |  260 --
 squid/ssi.c                        | 1530 -------
 squid/ssi.h                        |  191 -
 squid/stack.c                      |  101 -
 squid/stockholm.c                  |  630 ---
 squid/stockholm.h                  |   51 -
 squid/stopwatch.c                  |  309 --
 squid/stopwatch.h                  |   63 -
 squid/test_main.c                  |   27 -
 squid/translate.c                  |   84 -
 squid/translate_main.c             |  237 --
 squid/types.c                      |  230 --
 squid/vectorops.c                  |  299 --
 squid/vectorops.h                  |   36 -
 squid/weight.c                     |  751 ----
 squid/weight_main.c                |  189 -
 83 files changed, 32294 deletions(-)

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