[med-svn] [eagle] branch upstream updated (e12c01b -> 4625e66)

[Dylan Aïssi]

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bob.dybian-guest pushed a change to branch upstream
in repository eagle.

      from  e12c01b   Imported Upstream version 2.3.1
       new  4625e66   Imported Upstream version 2.3.2

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 example/example.log          |  68 ++++++++++++++++++++---------------------
 example/example_ref.log      |  16 +++++-----
 example/example_vcf.log      |  70 +++++++++++++++++++++----------------------
 example/phased.vcf.gz        | Bin 200385 -> 200384 bytes
 example/target.phased.vcf.gz | Bin 21050 -> 21053 bytes
 src/Eagle.cpp                |  22 ++++++++++++--
 src/Eagle.hpp                |   6 ++--
 src/EagleMain.cpp            |   5 ++--
 src/EagleParams.cpp          |   8 +++--
 src/EagleParams.hpp          |   1 +
 src/Makefile                 |   4 +--
 src/SyncedVcfData.cpp        |  63 ++++++++++++++++++++------------------
 src/SyncedVcfData.hpp        |   6 ++--
 src/Version.hpp              |   4 +--
 14 files changed, 149 insertions(+), 124 deletions(-)

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