[med-svn] [psortb] 01/01: Attempt to fix Algorithm-SVM build but this has no effect

[Andreas Tille]

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tille pushed a commit to branch master
in repository psortb.

commit 6b1366eb5cdc6f078e477d9ff4e6d00843d76ab5
Author: Andreas Tille <tille at debian.org>
Date:   Wed Apr 19 20:17:47 2017 +0200

    Attempt to fix Algorithm-SVM build but this has no effect
---
 debian/patches/fix_build_Algorithm-SVM.patch | 20 ++++++++++++++++++++
 debian/patches/fix_hmmer_interface.patch     |  5 +++++
 debian/patches/series                        |  1 +
 3 files changed, 26 insertions(+)

diff --git a/debian/patches/fix_build_Algorithm-SVM.patch b/debian/patches/fix_build_Algorithm-SVM.patch
new file mode 100644
index 0000000..08369d3
--- /dev/null
+++ b/debian/patches/fix_build_Algorithm-SVM.patch
@@ -0,0 +1,20 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Fri, 17 Mar 2017 10:23:15 +010
+Origin: https://rt.cpan.org/Public/Bug/Display.html?id=79754
+Description: Fix Build of code copy of Algorithm-SVM
+
+--- a/bio-tools-psort-svmloc/Makefile.PL
++++ b/bio-tools-psort-svmloc/Makefile.PL
+@@ -1,10 +1,11 @@
+ use ExtUtils::MakeMaker;
++use Config;
+ use lib '../lib';
+ use Bio::Tools::PSort::Install;
+ 
+ $CC = 'g++';
+ 
+-%args = ();
++%args = ('CCFLAGS' => "-Wall $Config{ccflags}");
+ 
+ @libs = qw/svmloc/;
+ %paths = ();
diff --git a/debian/patches/fix_hmmer_interface.patch b/debian/patches/fix_hmmer_interface.patch
index 89dbac8..9749696 100644
--- a/debian/patches/fix_hmmer_interface.patch
+++ b/debian/patches/fix_hmmer_interface.patch
@@ -1,3 +1,8 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Fri, 17 Mar 2017 10:23:15 +010
+Description: Enable linking against libhmmer.a as packaged
+ in hmmer2 source package
+
 --- a/algorithm-hmm/hmm-binding.cpp
 +++ b/algorithm-hmm/hmm-binding.cpp
 @@ -71,7 +71,7 @@ int HMM::load(char *filename) {
diff --git a/debian/patches/series b/debian/patches/series
index 86dc063..bcc14e2 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 biosquid_includes.patch
 fix_hmmer_interface.patch
+fix_build_Algorithm-SVM.patch

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