[med-svn] [psortb] 02/03: Add manpage

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository psortb.

commit d581a1ce04dd2d4d19cf037ba0f7252ba4e368a5
Author: Andreas Tille <tille at debian.org>
Date:   Mon Apr 24 16:51:39 2017 +0200

    Add manpage
---
 debian/createmanpages | 22 ++++++++++++++++++
 debian/manpages       |  1 +
 debian/psort.1        | 63 +++++++++++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 86 insertions(+)

diff --git a/debian/createmanpages b/debian/createmanpages
new file mode 100755
index 0000000..62466f8
--- /dev/null
+++ b/debian/createmanpages
@@ -0,0 +1,22 @@
+#!/bin/sh
+MANDIR=debian
+mkdir -p $MANDIR
+
+VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
+
+AUTHOR=".SH AUTHOR\nThis manpage was written by $DEBFULLNAME for the Debian distribution and
+can be used for any other usage of the program.
+"
+
+progname=psort
+help2man --no-info --no-discard-stderr --help-option=" " \
+         --name='bacterial localization prediction tool' \
+            --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1
+echo $AUTHOR >> $MANDIR/${progname}.1
+
+cat <<EOT
+Please enhance the help2man output.
+The following web page might be helpful in doing so:
+    http://liw.fi/manpages/
+EOT
+
diff --git a/debian/manpages b/debian/manpages
new file mode 100644
index 0000000..0f65186
--- /dev/null
+++ b/debian/manpages
@@ -0,0 +1 @@
+debian/*.1
diff --git a/debian/psort.1 b/debian/psort.1
new file mode 100644
index 0000000..67e4514
--- /dev/null
+++ b/debian/psort.1
@@ -0,0 +1,63 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
+.TH PSORT "1" "April 2017" "psort 3.0.4" "User Commands"
+.SH NAME
+psort \- bacterial localization prediction tool
+.SH SYNOPSIS
+.B psort
+[\fI\,-p|-n\/\fR] [\fI\,OPTIONS\/\fR] [\fI\,SEQFILE\/\fR]
+.SH DESCRIPTION
+Runs psort on the sequence file SEQFILE .  If SEQFILE isn't provided
+then sequences will be read from STDIN.
+.TP
+\fB\-\-help\fR, \fB\-h\fR
+Displays usage information
+.TP
+\fB\-\-positive\fR, \fB\-p\fR
+Gram positive bacteria
+.TP
+\fB\-\-negative\fR, \fB\-n\fR
+Gram negative bacteria
+.TP
+\fB\-\-archaea\fR, \fB\-a\fR
+Archaea
+.TP
+\fB\-\-cutoff\fR, \fB\-c\fR
+Sets a cutoff value for reported results
+.TP
+\fB\-\-divergent\fR, \fB\-d\fR
+Sets a cutoff value for the multiple
+localization flag
+.TP
+\fB\-\-matrix\fR, \fB\-m\fR
+Specifies the path to the pftools instalation.  If
+not set, defaults to the value of the PSORT_PFTOOLS
+environment variable.
+.TP
+\fB\-\-format\fR, \fB\-f\fR
+Specifies sequence format (default is FASTA)
+.TP
+\fB\-\-exact\fR, \fB\-e\fR
+Skip SCLBLASTe (useful for batch runs of data
+against itself in SCLBLAST)
+.TP
+\fB\-\-output\fR, \fB\-o\fR
+Specifies the format for the output (default is
+\&'normal'  Value can be one of: terse, long or normal
+.TP
+\fB\-\-root\fR, \fB\-r\fR
+Specify PSORT_ROOT for running local copies.  If
+not set, defaults to the value of the PSORT_ROOT
+environment variable.
+.TP
+\fB\-\-server\fR, \fB\-s\fR
+Specifies the PSort server to use
+.TP
+\fB\-\-verbose\fR, \fB\-v\fR
+Be verbose while running
+.HP
+\fB\-\-x\-skip\-localization\fR
+.TP
+\fB\-\-version\fR
+Print the version of PSortb
+.SH AUTHOR
+This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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