[med-svn] [pbseqlib] 01/02: Merge tag 'debian/0_20161219-1' into debian/jessie-backports
Afif Elghraoui
afif at moszumanska.debian.org
Wed Apr 26 05:20:23 UTC 2017
This is an automated email from the git hooks/post-receive script.
afif pushed a commit to branch debian/jessie-backports
in repository pbseqlib.
commit e1b2f6046c1a6ec13e63aed03adbd0dcfd72c7bd
Merge: 3d45427 1e2c59b
Author: Afif Elghraoui <afif at debian.org>
Date: Tue Apr 25 23:47:19 2017 -0400
Merge tag 'debian/0_20161219-1' into debian/jessie-backports
pbseqlib (0~20161219-1) unstable; urgency=medium
* Imported Upstream version 0~20161219
(upstream git 61c6ab0)
* Update to debhelper compat 10
-- Afif Elghraoui <afif at debian.org> Tue, 20 Dec 2016 00:55:41 -0800
Conflicts:
debian/changelog
.gitignore | 2 +
LICENSE | 100 ++++
alignment/MappingMetrics.cpp | 9 +-
.../algorithms/alignment/AffineGuidedAlign.hpp | 21 +-
.../algorithms/alignment/AffineKBandAlign.hpp | 34 +-
alignment/algorithms/alignment/AlignmentUtils.hpp | 6 +-
.../algorithms/alignment/AlignmentUtilsImpl.hpp | 10 +-
.../alignment/DistanceMatrixScoreFunctionImpl.hpp | 33 +-
alignment/algorithms/alignment/ExtendAlign.cpp | 6 +-
alignment/algorithms/alignment/ExtendAlign.hpp | 32 +-
alignment/algorithms/alignment/FullQVAlign.hpp | 14 +-
alignment/algorithms/alignment/GraphPaper.hpp | 4 +-
alignment/algorithms/alignment/GraphPaperImpl.hpp | 13 +-
alignment/algorithms/alignment/GuidedAlign.cpp | 30 +-
alignment/algorithms/alignment/GuidedAlign.hpp | 47 +-
.../algorithms/alignment/IDSScoreFunction.cpp | 15 +-
.../algorithms/alignment/IDSScoreFunction.hpp | 23 +-
alignment/algorithms/alignment/KBandAlign.cpp | 2 +-
alignment/algorithms/alignment/KBandAlign.hpp | 34 +-
alignment/algorithms/alignment/OneGapAlignment.hpp | 15 +-
.../alignment/QualityValueScoreFunction.cpp | 26 ++
.../alignment/QualityValueScoreFunction.hpp | 8 +-
alignment/algorithms/alignment/SDPAlign.hpp | 9 +-
alignment/algorithms/alignment/SDPAlignImpl.hpp | 35 +-
alignment/algorithms/alignment/SWAlignImpl.hpp | 19 +-
alignment/algorithms/alignment/sdp/SDPSetImpl.hpp | 2 +-
.../alignment/sdp/SparseDynamicProgramming.hpp | 10 +-
.../alignment/sdp/SparseDynamicProgrammingImpl.hpp | 8 +-
alignment/algorithms/anchoring/BWTSearch.cpp | 2 +-
alignment/algorithms/anchoring/BWTSearch.hpp | 10 +-
alignment/algorithms/anchoring/BasicEndpoint.hpp | 6 +-
.../algorithms/anchoring/BasicEndpointImpl.hpp | 2 +-
.../algorithms/anchoring/ClusterProbability.cpp | 2 +-
alignment/algorithms/anchoring/Coordinate.cpp | 2 +-
alignment/algorithms/anchoring/Coordinate.hpp | 2 +-
alignment/algorithms/anchoring/FindMaxInterval.cpp | 2 +-
alignment/algorithms/anchoring/FindMaxInterval.hpp | 19 +-
.../algorithms/anchoring/FindMaxIntervalImpl.hpp | 39 +-
alignment/algorithms/anchoring/GlobalChain.hpp | 10 +-
alignment/algorithms/anchoring/GlobalChainImpl.hpp | 12 +-
alignment/algorithms/anchoring/LISPValue.hpp | 8 +-
alignment/algorithms/anchoring/LISPValueImpl.hpp | 12 +-
.../algorithms/anchoring/LISPValueWeightor.hpp | 6 +-
.../algorithms/anchoring/LISPValueWeightorImpl.hpp | 8 +-
.../algorithms/anchoring/LISQValueWeightor.hpp | 7 +-
alignment/algorithms/anchoring/LISSizeWeightor.hpp | 4 +-
.../anchoring/LongestIncreasingSubsequence.hpp | 2 +-
.../anchoring/LongestIncreasingSubsequenceImpl.hpp | 6 +-
.../algorithms/anchoring/MapBySuffixArray.hpp | 12 +-
.../algorithms/anchoring/MapBySuffixArrayImpl.hpp | 24 +-
.../algorithms/anchoring/PrioritySearchTree.hpp | 4 +-
alignment/algorithms/anchoring/ScoreAnchors.hpp | 10 +-
.../algorithms/anchoring/ScoreAnchorsImpl.hpp | 14 +-
alignment/algorithms/sorting/DifferenceCovers.cpp | 7 +-
alignment/algorithms/sorting/DifferenceCovers.hpp | 4 +-
alignment/algorithms/sorting/Karkkainen.hpp | 10 +-
.../algorithms/sorting/LightweightSuffixArray.cpp | 29 +-
.../algorithms/sorting/LightweightSuffixArray.hpp | 7 +-
alignment/algorithms/sorting/MultikeyQuicksort.cpp | 16 +-
alignment/algorithms/sorting/MultikeyQuicksort.hpp | 9 +-
alignment/algorithms/sorting/qsufsort.hpp | 2 +-
alignment/anchoring/AnchorParameters.hpp | 4 +-
alignment/bwt/BWT.hpp | 13 +-
alignment/bwt/Occ.hpp | 10 +-
alignment/bwt/PackedHash.hpp | 8 +-
alignment/bwt/Pos.hpp | 6 +-
alignment/datastructures/alignment/Alignment.cpp | 48 +-
alignment/datastructures/alignment/Alignment.hpp | 4 +-
.../alignment/AlignmentCandidate.hpp | 6 +-
.../datastructures/alignment/AlignmentContext.hpp | 3 +-
.../datastructures/alignment/AlignmentMap.cpp | 2 +-
alignment/datastructures/alignment/ByteAlignment.h | 38 +-
alignment/datastructures/alignment/CmpFile.hpp | 17 +-
.../alignment/CmpIndexedStringTable.h | 3 +-
.../datastructures/alignment/FilterCriteria.cpp | 9 +-
.../datastructures/alignment/FilterCriteria.hpp | 3 +-
.../alignment/SAMToAlignmentCandidateAdapter.cpp | 48 +-
.../alignment/SAMToAlignmentCandidateAdapter.hpp | 23 +-
.../alignmentset/AlignmentSetToCmpH5Adapter.hpp | 8 +-
.../AlignmentSetToCmpH5AdapterImpl.hpp | 14 +-
.../alignmentset/SAMQVConversion.cpp | 2 +-
.../alignmentset/SAMSupplementalQVList.cpp | 3 +-
.../alignmentset/SAMSupplementalQVList.hpp | 2 +-
.../datastructures/anchoring/AnchorParameters.hpp | 8 +-
alignment/datastructures/anchoring/ClusterList.cpp | 2 +-
alignment/datastructures/anchoring/ClusterList.hpp | 2 +-
alignment/datastructures/anchoring/MatchPos.hpp | 18 +-
.../datastructures/anchoring/WeightedInterval.cpp | 13 +-
.../datastructures/anchoring/WeightedInterval.hpp | 8 +-
alignment/files/BaseSequenceIO.cpp | 22 +-
alignment/files/BaseSequenceIO.hpp | 2 +-
alignment/files/CCSIterator.cpp | 2 +-
alignment/files/CCSIterator.hpp | 2 +-
alignment/files/FragmentCCSIterator.cpp | 25 +-
alignment/files/FragmentCCSIterator.hpp | 6 +-
alignment/files/ReaderAgglomerate.cpp | 421 +++++++++++------
alignment/files/ReaderAgglomerate.hpp | 63 ++-
alignment/format/BAMPrinter.hpp | 30 +-
alignment/format/BAMPrinterImpl.hpp | 81 +---
alignment/format/CompareSequencesPrinter.hpp | 2 +-
alignment/format/CompareSequencesPrinterImpl.hpp | 4 +-
alignment/format/IntervalPrinter.hpp | 4 +-
alignment/format/SAMHeaderPrinter.cpp | 52 ++-
alignment/format/SAMHeaderPrinter.hpp | 16 +-
alignment/format/SAMPrinter.cpp | 56 ++-
alignment/format/SAMPrinter.hpp | 57 ++-
alignment/format/SAMPrinterImpl.hpp | 16 +-
alignment/format/StickAlignmentPrinter.hpp | 4 +-
alignment/format/SummaryPrinter.hpp | 4 +-
alignment/format/XMLPrinter.hpp | 1 +
alignment/ipc/SharedMemoryAllocator.hpp | 4 +-
alignment/makefile | 13 +-
alignment/query/PbiFilterZmwGroupQuery.cpp | 77 ++++
alignment/query/PbiFilterZmwGroupQuery.h | 37 ++
alignment/query/SequentialZmwGroupQuery.cpp | 71 +++
alignment/query/SequentialZmwGroupQuery.h | 35 ++
alignment/qvs/QualityValueProfile.hpp | 8 +-
alignment/simulator/CDFMap.hpp | 2 +-
alignment/simulator/ContextOutputList.hpp | 4 +-
alignment/simulator/ContextSample.cpp | 5 +-
alignment/simulator/ContextSample.hpp | 10 +-
alignment/simulator/LengthHistogram.cpp | 6 +-
alignment/simulator/LengthHistogram.hpp | 6 +-
alignment/simulator/OutputSample.hpp | 2 +-
alignment/simulator/OutputSampleListSet.hpp | 2 +-
alignment/simulator/QualitySample.hpp | 6 +-
alignment/statistics/AnchorDistributionTable.hpp | 20 +-
alignment/statistics/LookupAnchorDistribution.cpp | 45 +-
alignment/statistics/LookupAnchorDistribution.hpp | 2 +-
alignment/statistics/StatUtils.cpp | 3 +
alignment/statistics/StatUtilsImpl.hpp | 2 +-
alignment/statistics/VarianceAccumulator.hpp | 2 +-
alignment/statistics/pdfs.cpp | 6 -
alignment/statistics/pdfs.hpp | 2 -
alignment/suffixarray/LCPTable.hpp | 2 +-
alignment/suffixarray/SharedSuffixArray.hpp | 8 +-
alignment/suffixarray/SuffixArray.hpp | 32 +-
alignment/suffixarray/SuffixArrayTypes.hpp | 6 +-
alignment/suffixarray/ssort.hpp | 34 +-
alignment/tuples/BaseTuple.cpp | 26 +-
alignment/tuples/BaseTuple.hpp | 20 +-
alignment/tuples/CompressedDNATuple.hpp | 5 +-
alignment/tuples/DNATuple.cpp | 41 +-
alignment/tuples/DNATuple.hpp | 52 ++-
alignment/tuples/DNATupleImpl.hpp | 8 +-
alignment/tuples/HashedTupleList.hpp | 6 +-
alignment/tuples/TupleCountTable.hpp | 6 +-
alignment/tuples/TupleCountTableImpl.hpp | 6 +-
alignment/tuples/TupleList.hpp | 4 +-
alignment/tuples/TupleMask.h | 2 +-
alignment/tuples/TupleMatching.hpp | 10 +-
alignment/tuples/TupleMatchingImpl.hpp | 10 +-
alignment/tuples/TupleMetrics.cpp | 9 +-
alignment/tuples/TupleMetrics.hpp | 6 +-
alignment/tuples/tuple.h | 2 +-
alignment/utils/FileOfFileNames.cpp | 6 +-
alignment/utils/FileOfFileNames.hpp | 2 +-
alignment/utils/FileUtils.cpp | 2 +-
alignment/utils/FileUtils.hpp | 4 +-
alignment/utils/RangeUtils.hpp | 4 +-
alignment/utils/RegionUtils.cpp | 13 +-
alignment/utils/RegionUtils.hpp | 10 +-
alignment/utils/RegionUtilsImpl.hpp | 2 +
configure.py | 27 +-
debian/README.source | 13 +
debian/changelog | 34 ++
debian/compat | 2 +-
debian/control | 19 +-
debian/copyright | 4 +-
debian/libblasr-dev.install | 2 +
debian/libblasr-dev.install.in | 1 -
debian/libblasr.install | 2 +
debian/libblasr.install.in | 1 -
debian/libblasr.lintian-overrides | 1 -
debian/libblasr.triggers | 1 +
debian/libpbdata-dev.install | 2 +
debian/libpbdata-dev.install.in | 1 -
debian/libpbdata.install | 2 +
debian/libpbdata.install.in | 1 -
debian/libpbdata.triggers | 1 +
debian/libpbihdf-dev.install | 2 +
debian/libpbihdf-dev.install.in | 1 -
debian/libpbihdf.install | 2 +
debian/libpbihdf.install.in | 1 -
debian/libpbihdf.triggers | 1 +
debian/patches/32bit-narrowing-conversion.patch | 22 -
debian/patches/exclude-pbbam.patch | 33 --
debian/patches/external-gtest.patch | 34 --
debian/patches/series | 3 -
debian/rules | 34 +-
debian/source/lintian-overrides | 3 +
exports | 300 ++++++++++++
hdf/BufferedHDF2DArray.cpp | 8 +-
hdf/BufferedHDF2DArray.hpp | 35 +-
hdf/BufferedHDF2DArrayImpl.hpp | 52 ++-
hdf/BufferedHDFArray.cpp | 2 +-
hdf/BufferedHDFArray.hpp | 46 +-
hdf/BufferedHDFArrayImpl.hpp | 38 +-
hdf/HDFAlnGroupGroup.hpp | 2 +-
hdf/HDFAlnInfoGroup.hpp | 4 +-
hdf/HDFAlnInfoGroup.o.tmp.rm.login14-biofx01.11097 | Bin 0 -> 211992 bytes
hdf/HDFArray.hpp | 8 +-
hdf/HDFAtom.cpp | 12 +
hdf/HDFAtom.hpp | 22 +-
hdf/HDFAttributable.cpp | 1 +
hdf/HDFAttributable.hpp | 3 +-
hdf/HDFBasReader.cpp | 46 --
hdf/HDFBasReader.hpp | 127 +++--
hdf/HDFBasWriter.hpp | 10 +-
hdf/HDFBaseCallsWriter.cpp | 266 ++++++-----
hdf/HDFBaseCallsWriter.hpp | 162 +++----
hdf/HDFBaxWriter.cpp | 123 ++---
hdf/HDFBaxWriter.hpp | 131 ++----
hdf/HDFCCSReader.hpp | 1 +
hdf/HDFCmpExperimentGroup.hpp | 2 +-
hdf/HDFCmpFile.hpp | 61 ++-
hdf/HDFCmpReader.hpp | 21 +-
hdf/HDFCmpRefAlignmentGroup.hpp | 3 +-
hdf/HDFCmpRootGroup.hpp | 2 +-
hdf/HDFData.cpp | 2 +
hdf/HDFData.hpp | 2 +-
hdf/HDFFile.hpp | 2 +-
hdf/HDFFileLogGroup.hpp | 3 +-
hdf/HDFGroup.hpp | 5 +-
hdf/HDFMovieInfoGroup.hpp | 2 +-
hdf/HDFPlsReader.hpp | 33 +-
hdf/HDFPlsWriter.hpp | 7 +-
hdf/HDFPulseCallsWriter.cpp | 511 +++++++++++++++++++++
hdf/HDFPulseCallsWriter.hpp | 213 +++++++++
hdf/HDFPulseDataFile.cpp | 25 +-
hdf/HDFPulseDataFile.hpp | 41 +-
hdf/HDFPulseH5Writer.cpp | 0
hdf/HDFPulseWriter.cpp | 110 +++++
hdf/HDFPulseWriter.hpp | 102 ++++
hdf/HDFRefGroupGroup.hpp | 2 +-
hdf/HDFRefInfoGroup.hpp | 4 +-
hdf/HDFRegionTableReader.hpp | 4 +-
hdf/HDFRegionTableWriter.hpp | 6 +-
hdf/HDFRegionsWriter.cpp | 49 +-
hdf/HDFRegionsWriter.hpp | 41 +-
hdf/HDFSMRTSequenceReader.hpp | 1 +
hdf/HDFScanDataReader.hpp | 5 +-
hdf/HDFScanDataWriter.cpp | 92 ++--
hdf/HDFScanDataWriter.hpp | 65 ++-
hdf/HDFUtils.hpp | 2 +-
hdf/HDFWriteBuffer.hpp | 4 +-
hdf/HDFWriterBase.cpp | 90 ++--
hdf/HDFWriterBase.hpp | 158 +++++--
hdf/HDFZMWMetricsWriter.cpp | 43 +-
hdf/HDFZMWMetricsWriter.hpp | 37 +-
hdf/HDFZMWReader.cpp | 6 +-
hdf/HDFZMWReader.hpp | 10 +-
hdf/HDFZMWWriter.cpp | 212 ++++++---
hdf/HDFZMWWriter.hpp | 145 +++---
hdf/makefile | 10 +-
makefile | 2 +
pbdata/CCSSequence.hpp | 4 +-
pbdata/CommandLineParser.cpp | 83 ++--
pbdata/CommandLineParser.hpp | 40 +-
pbdata/CompressedSequence.hpp | 2 +-
pbdata/CompressedSequenceImpl.hpp | 9 +-
pbdata/DNASequence.cpp | 3 +-
pbdata/DNASequence.hpp | 2 +-
pbdata/Enumerations.h | 41 +-
pbdata/FASTAReader.cpp | 52 ++-
pbdata/FASTAReader.hpp | 14 +-
pbdata/FASTQReader.cpp | 12 +-
pbdata/FASTQReader.hpp | 2 +-
pbdata/FASTQSequence.cpp | 5 +-
pbdata/GFFFile.cpp | 1 +
pbdata/PacBioDefs.h | 84 ++--
pbdata/PackedDNASequence.cpp | 4 +-
pbdata/SMRTSequence.cpp | 225 ++++++---
pbdata/SMRTSequence.hpp | 76 ++-
pbdata/StringUtils.cpp | 4 +-
pbdata/StringUtils.hpp | 2 +-
pbdata/Types.h | 16 +-
pbdata/alignment/CmpAlignment.cpp | 11 +-
pbdata/alignment/CmpAlignment.hpp | 14 +-
pbdata/alignment/CmpAlignmentImpl.hpp | 2 +-
pbdata/amos/AfgBasWriter.cpp | 6 +-
pbdata/amos/AfgBasWriter.hpp | 5 +-
pbdata/loadpulses/MetricField.hpp | 2 +-
pbdata/loadpulses/MovieAlnIndexLookupTable.cpp | 16 +-
pbdata/loadpulses/MovieAlnIndexLookupTable.hpp | 44 +-
pbdata/makefile | 15 +-
pbdata/matrix/FlatMatrix.hpp | 2 +
pbdata/matrix/FlatMatrixImpl.hpp | 4 +-
pbdata/matrix/Matrix.hpp | 2 +-
pbdata/matrix/MatrixImpl.hpp | 6 +-
pbdata/metagenome/FindRandomSequence.hpp | 4 +-
pbdata/metagenome/SequenceIndexDatabase.hpp | 8 +-
pbdata/metagenome/SequenceIndexDatabaseImpl.hpp | 8 +-
pbdata/metagenome/TitleTable.hpp | 2 +-
pbdata/qvs/QualityValue.cpp | 2 +-
pbdata/qvs/QualityValue.hpp | 2 +-
pbdata/qvs/QualityValueVector.hpp | 14 +-
pbdata/qvs/QualityValueVectorImpl.hpp | 21 +-
pbdata/reads/AcqParams.cpp | 11 +
pbdata/reads/AcqParams.hpp | 25 +
pbdata/reads/BaseFile.cpp | 6 +-
pbdata/reads/BaseFile.hpp | 19 +-
pbdata/reads/BaseFileImpl.hpp | 2 +-
pbdata/reads/HoleXY.hpp | 3 +
pbdata/reads/PulseBaseCommon.cpp | 35 --
pbdata/reads/PulseBaseCommon.hpp | 35 --
pbdata/reads/PulseFile.cpp | 73 +--
pbdata/reads/PulseFile.hpp | 46 +-
pbdata/reads/PulseFileImpl.hpp | 13 +-
pbdata/reads/ReadInterval.hpp | 8 +
pbdata/reads/RegionAnnotation.cpp | 35 --
pbdata/reads/RegionAnnotation.hpp | 44 +-
pbdata/reads/RegionAnnotations.cpp | 49 +-
pbdata/reads/RegionAnnotations.hpp | 35 --
pbdata/reads/RegionTable.cpp | 39 +-
pbdata/reads/RegionTable.hpp | 41 +-
pbdata/reads/RegionTypeMap.cpp | 35 --
pbdata/reads/RegionTypeMap.hpp | 39 +-
pbdata/reads/ScanData.cpp | 73 +--
pbdata/reads/ScanData.hpp | 47 +-
pbdata/reads/ZMWGroupEntry.cpp | 2 +-
pbdata/reads/ZMWGroupEntry.hpp | 4 +-
pbdata/saf/AlnGroup.cpp | 5 +-
pbdata/saf/AlnGroup.hpp | 2 +-
pbdata/saf/AlnInfo.hpp | 4 +-
pbdata/saf/MovieInfo.cpp | 5 +-
pbdata/saf/MovieInfo.hpp | 4 +-
pbdata/saf/RefGroup.cpp | 10 +-
pbdata/saf/RefGroup.hpp | 4 +-
pbdata/saf/RefInfo.cpp | 3 +-
pbdata/sam/AlignmentSet.hpp | 10 +-
pbdata/sam/AlignmentSetImpl.hpp | 2 +-
pbdata/sam/ReadGroup.cpp | 10 +-
pbdata/sam/ReadGroup.hpp | 6 +-
pbdata/sam/ReferenceSequence.cpp | 13 +-
pbdata/sam/ReferenceSequence.hpp | 10 +-
pbdata/sam/SAMAlignment.cpp | 9 +-
pbdata/sam/SAMAlignment.hpp | 6 +-
pbdata/sam/SAMHeader.cpp | 3 +-
pbdata/sam/SAMHeader.hpp | 2 +-
pbdata/sam/SAMKeywordValuePair.cpp | 5 +-
pbdata/sam/SAMKeywordValuePair.hpp | 2 +-
pbdata/sam/SAMReader.hpp | 16 +-
pbdata/sam/SAMReaderImpl.hpp | 3 +-
pbdata/utils.hpp | 2 +-
pbdata/utils/BitUtils.cpp | 7 -
pbdata/utils/BitUtils.hpp | 2 +-
pbdata/utils/SMRTReadUtils.cpp | 4 +-
pbdata/utils/SMRTReadUtils.hpp | 4 +-
pbdata/utils/SMRTTitle.cpp | 2 +-
pbdata/utils/SMRTTitle.hpp | 4 +-
{alignment => pbdata}/utils/TimeUtils.cpp | 2 +-
{alignment => pbdata}/utils/TimeUtils.hpp | 0
pbdata/utilsImpl.hpp | 2 +-
rules.mk | 1 +
travis.sh | 6 +-
.../alignment/files/ReaderAgglomerate_gtest.cpp | 88 +++-
unittest/alignment/format/SAMPrinter_gtest.cpp | 58 ++-
.../query/PbiFilterZmwGroupQuery_gtest.cpp | 87 ++++
.../query/SequentialZmwGroupQuery_gtest.cpp | 70 +++
unittest/makefile | 17 +-
unittest/pbdata/SMRTSequence_gtest.cpp | 206 ++++++++-
unittest/pbdata/qvs/QualityValueVector_gtest.cpp | 33 ++
unittest/pbdata/testdata.h | 12 +-
364 files changed, 5384 insertions(+), 3510 deletions(-)
diff --cc debian/changelog
index 8da15cc,b12d378..5c8dbbf
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,9 -1,37 +1,43 @@@
+ pbseqlib (0~20161219-1) unstable; urgency=medium
+
+ * Imported Upstream version 0~20161219
+ (upstream git 61c6ab0)
+ * Update to debhelper compat 10
+
+ -- Afif Elghraoui <afif at debian.org> Tue, 20 Dec 2016 00:55:41 -0800
+
+ pbseqlib (0~20160705-2) unstable; urgency=medium
+
+ * Build with pbbam
+
+ -- Afif Elghraoui <afif at debian.org> Sat, 17 Dec 2016 23:08:34 -0800
+
+ pbseqlib (0~20160705-1) unstable; urgency=medium
+
+ * Imported Upstream version 0~20160705
+ (upstream git 0ae1691)
+ - Drop patches
+ - Fix "clean" target
+ * Move header files to avoid breaking relative paths
+ * Bump Standards-Version to 3.9.8
+ * Don't put libpbseq in Metapackages section
+ * Use encrypted protocols for VCS
+ * Update email address and copyright years
+ * Use O3 optimization
+ * Use dh-exec to handle library installation
+ * Install libraries to main ldpath and add ld triggers
+ * Remove unnecessary definition in d/rules
+ * Remove obsolete lintian overrides
+ * Add README.source to explain relationship with reverse-dependencies
+
+ -- Afif Elghraoui <afif at debian.org> Sun, 23 Oct 2016 18:17:42 -0700
+
+pbseqlib (0~20151014+gitbe5d1bf-2~bpo8+1) jessie-backports; urgency=medium
+
+ * Rebuild for jessie-backports.
+
+ -- Afif Elghraoui <afif at ghraoui.name> Fri, 18 Dec 2015 21:13:39 -0800
+
pbseqlib (0~20151014+gitbe5d1bf-2) unstable; urgency=medium
* Add package interdependencies.
--
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