[med-svn] samtools 01/07: Updated version 1.5 from '1.5'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch debian/unstable
in repository samtools.

commit 5eef358408da5e86c3365139744723915ee67d9b
Merge: ae32134 8a06c51
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jul 20 12:14:22 2017 +0200

    Updated version 1.5 from '1.5'
    
    with Debian dir 1f9b98601b18347e19cc5281a1b3b962281ce872

 .gitattributes                         |  13 --
 .gitignore                             |  26 ---
 .travis.yml                            |  40 ----
 .travis/clone                          |  14 --
 Makefile                               |   3 +-
 NEWS                                   |  15 ++
 README                                 |  15 +-
 README.md                              |  32 ---
 bam.h                                  |   2 +-
 bam_sort.c                             | 237 ++++++++++++++++++-----
 examples/.gitignore                    |   9 -
 misc/wgsim.1                           |   2 +-
 sam_view.c                             | 342 +++++++++++++++++++++++++--------
 samtools.1                             |  78 +++++++-
 test/bam2fq/6.1.fq.expected            |  68 +++++++
 test/bam2fq/6.2.fq.expected            |  68 +++++++
 test/bam2fq/6.s.fq.expected            |   8 +
 test/bam2fq/7.1.fq.expected            |  68 +++++++
 test/bam2fq/7.2.fq.expected            |  68 +++++++
 test/bam2fq/7.s.fq.expected            |   8 +
 test/bam2fq/8.1.fq.expected            |  68 +++++++
 test/bam2fq/8.2.fq.expected            |  68 +++++++
 test/bam2fq/8.i.fq.expected            |  12 ++
 test/bam2fq/8.s.fq.expected            |   8 +
 test/dat/.gitignore                    |   2 -
 test/dat/bam2fq.005.sam                |   2 +-
 test/dat/test_input_1_d.sam            |  24 +++
 test/merge/.gitignore                  |   5 -
 test/merge/tag.pg.merge.expected.sam   |  37 ++++
 test/merge/tag.pg.n.merge.expected.sam |  39 ++++
 test/mpileup/.gitignore                |  12 --
 test/sort/name.sort.expected.sam       |  28 +++
 test/sort/pos.sort.expected.sam        |  28 +++
 test/sort/tag.as.sort.expected.sam     |  24 +++
 test/sort/tag.fi.sort.expected.sam     |  24 +++
 test/sort/tag.rg.n.sort.expected.sam   |  28 +++
 test/sort/tag.rg.sort.expected.sam     |  28 +++
 test/split/.gitignore                  |   4 -
 test/test.pl                           |  38 ++++
 39 files changed, 1293 insertions(+), 302 deletions(-)

-- 
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