[med-svn] samtools 07/07: Do not warn about cwl-runner , upload to unstable

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch debian/unstable
in repository samtools.

commit 7f525ad6da62b79b1910f5b44c94a14c064a622a
Author: Andreas Tille <tille at debian.org>
Date:   Fri Aug 4 18:55:59 2017 +0200

    Do not warn about cwl-runner , upload to unstable
---
 debian/changelog                  | 4 ++--
 debian/samtools.lintian-overrides | 8 +++++++-
 2 files changed, 9 insertions(+), 3 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index ef4696f..1907028 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-samtools (1.5-1) UNRELEASED; urgency=medium
+samtools (1.5-1) unstable; urgency=medium
 
   * New upstream version
   * debhelper 10
@@ -6,7 +6,7 @@ samtools (1.5-1) UNRELEASED; urgency=medium
   * Bump versioned Build-Depends: libhts-dev (>= 1.5)
   * Add recommends to cwl-tool and fix shebang line of cwl scripts
 
- -- Andreas Tille <tille at debian.org>  Thu, 20 Jul 2017 12:14:48 +0200
+ -- Andreas Tille <tille at debian.org>  Fri, 04 Aug 2017 17:58:11 +0200
 
 samtools (1.4.1-1) unstable; urgency=medium
 
diff --git a/debian/samtools.lintian-overrides b/debian/samtools.lintian-overrides
index e88bb4e..a2f1c98 100644
--- a/debian/samtools.lintian-overrides
+++ b/debian/samtools.lintian-overrides
@@ -1,4 +1,10 @@
 # Even if there is a conflict with Debian policy samtools internally
 # relies on these extensions (see #799698)
 samtools: script-with-language-extension usr/bin/*.pl
-samtools: script-with-language-extension usr/bin/*.py
\ No newline at end of file
+samtools: script-with-language-extension usr/bin/*.py
+# /usr/bin/cwl-runner is provided by cwltool (in Recomends, which is a bit weak but should be sufficient for this case)
+samtools: unusual-interpreter usr/share/commonwl/samtools-faidx.cwl #!/usr/bin/cwl-runner
+samtools: unusual-interpreter usr/share/commonwl/samtools-index.cwl #!/usr/bin/cwl-runner
+samtools: unusual-interpreter usr/share/commonwl/samtools-rmdup.cwl #!/usr/bin/cwl-runner
+samtools: unusual-interpreter usr/share/commonwl/samtools-sort.cwl #!/usr/bin/cwl-runner
+samtools: unusual-interpreter usr/share/commonwl/samtools-view.cwl #!/usr/bin/cwl-runner

-- 
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