[med-svn] [roary] branch upstream updated (c94f09a -> ae62722)

[Sascha Steinbiss]

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satta pushed a change to branch upstream
in repository roary.

      from  c94f09a   New upstream version 3.8.2+dfsg
       new  ae62722   New upstream version 3.9.0+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                                          | 20 ++++-
 bin/roary-unique_genes_per_sample                  | 19 +++++
 dist.ini                                           |  2 +-
 lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm  | 92 ++++++++++++++++++++++
 lib/Bio/Roary/UniqueGenesPerSample.pm              | 80 +++++++++++++++++++
 t/Bio/Roary/UniqueGenesPerSample.t                 | 37 +++++++++
 .../clustered_proteins_valid                       |  6 ++
 .../expected_unique_genes_per_sample.tsv           |  4 +
 8 files changed, 257 insertions(+), 3 deletions(-)
 create mode 100755 bin/roary-unique_genes_per_sample
 create mode 100644 lib/Bio/Roary/CommandLine/UniqueGenesPerSample.pm
 create mode 100644 lib/Bio/Roary/UniqueGenesPerSample.pm
 create mode 100755 t/Bio/Roary/UniqueGenesPerSample.t
 create mode 100644 t/data/unique_genes_per_sample/clustered_proteins_valid
 create mode 100644 t/data/unique_genes_per_sample/expected_unique_genes_per_sample.tsv

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