[med-svn] [cwltool] branch master updated (26c8c52 -> 9381cde)

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a change to branch master
in repository cwltool.

      from  26c8c52   new upstream release
      adds  06dbfdb   drop typing patch, no longer needed
      adds  cd43a05   New upstream version 1.0.20170803160545
      adds  29cb30f   New upstream version 1.0.20170810192106
      adds  55a0ebb   Updated version 1.0.20170810192106 from 'upstream/1.0.20170810192106'
      adds  9381cde   new upstream

No new revisions were added by this update.

Summary of changes:
 PKG-INFO                                           |  2 +-
 cwltool.egg-info/PKG-INFO                          |  2 +-
 cwltool.egg-info/SOURCES.txt                       | 28 ++++++++++
 cwltool.egg-info/pbr.json                          |  1 +
 cwltool.egg-info/requires.txt                      | 16 +++---
 cwltool/builder.py                                 | 34 ++++++++----
 cwltool/draft2tool.py                              | 64 ++++++++++++++++------
 cwltool/expression.py                              | 19 ++++---
 cwltool/job.py                                     | 15 +++--
 cwltool/main.py                                    |  4 +-
 cwltool/pack.py                                    |  5 ++
 cwltool/pathmapper.py                              | 44 +++++++++++++--
 cwltool/process.py                                 |  1 +
 cwltool/sandboxjs.py                               | 12 ++--
 .../schemas/draft-3/index.md                       |  0
 .../salad/schema_salad/metaschema/metaschema2.yml} |  4 +-
 cwltool/stdfsaccess.py                             |  2 +
 debian/changelog                                   |  6 +-
 debian/patches/older-rdflib                        |  4 +-
 debian/patches/series                              |  1 -
 debian/patches/typing.patch                        | 13 -----
 setup.cfg                                          |  3 +-
 setup.py                                           |  2 +-
 tests/cat.cwl                                      |  8 +++
 tests/cat2.cwl                                     |  9 +++
 tests/{wf/cat.cwl => env.cwl}                      |  5 +-
 tests/item1.yml                                    |  3 +
 tests/output.txt                                   | 16 ++++++
 tests/test_http_input.py                           | 26 +++++++++
 tests/test_pack.py                                 | 27 +++++++++
 tests/value                                        |  1 +
 tests/wf/4c637b77-8130-4158-807c-ccc78ea7b563      |  1 +
 tests/wf/c5b8320e-6e31-4bbb-8453-03b054b3254e      |  1 +
 tests/wf/conditional.cwl                           | 22 ++++++++
 tests/wf/emptyscatter.cwl                          | 18 ++++++
 tests/wf/emptyscatter.yml                          |  1 +
 tests/wf/foo1.txt                                  |  1 +
 tests/wf/foo3.txt                                  |  1 +
 tests/wf/fooa.txt                                  |  1 +
 tests/wf/foob.txt                                  |  1 +
 tests/wf/foofoo5.txt.txt                           |  1 +
 .../{missing_cwlVersion.cwl => hello-workflow.cwl} | 13 ++++-
 tests/wf/hello_single_tool.cwl                     |  9 +++
 tests/wf/loop.cwl                                  | 36 ++++++++++++
 tests/wf/output.txt                                | 16 ++++++
 tests/wf/revsort-ovr2-job.json                     | 15 +++++
 tests/wf/value                                     |  1 +
 tests/wf/whale.txt                                 | 16 ++++++
 tests/writeable.cwl                                | 11 ++++
 49 files changed, 449 insertions(+), 93 deletions(-)
 create mode 100644 cwltool.egg-info/pbr.json
 copy tests/__init__.py => cwltool/schemas/draft-3/index.md (100%)
 copy cwltool/schemas/{v1.1.0-dev1/salad/schema_salad/metaschema/metaschema.yml => v1.0/salad/schema_salad/metaschema/metaschema2.yml} (99%)
 delete mode 100644 debian/patches/typing.patch
 create mode 100644 tests/cat.cwl
 create mode 100644 tests/cat2.cwl
 copy tests/{wf/cat.cwl => env.cwl} (50%)
 create mode 100644 tests/item1.yml
 create mode 100644 tests/output.txt
 create mode 100644 tests/test_http_input.py
 create mode 100644 tests/value
 create mode 100644 tests/wf/4c637b77-8130-4158-807c-ccc78ea7b563
 create mode 100644 tests/wf/c5b8320e-6e31-4bbb-8453-03b054b3254e
 create mode 100644 tests/wf/conditional.cwl
 create mode 100644 tests/wf/emptyscatter.cwl
 create mode 100644 tests/wf/emptyscatter.yml
 create mode 100644 tests/wf/foo1.txt
 create mode 100644 tests/wf/foo3.txt
 create mode 100644 tests/wf/fooa.txt
 create mode 100644 tests/wf/foob.txt
 create mode 100644 tests/wf/foofoo5.txt.txt
 copy tests/wf/{missing_cwlVersion.cwl => hello-workflow.cwl} (77%)
 create mode 100644 tests/wf/hello_single_tool.cwl
 create mode 100644 tests/wf/loop.cwl
 create mode 100644 tests/wf/output.txt
 create mode 100644 tests/wf/revsort-ovr2-job.json
 create mode 100644 tests/wf/value
 create mode 100644 tests/wf/whale.txt
 create mode 100644 tests/writeable.cwl

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