[med-svn] [hilive] 02/03: Updated version 1.0 from 'upstream/1.0'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository hilive.

commit 0a552c2168cd88599094a7b69b12994919f02b18
Merge: 7a67501 9eef8b7
Author: Andreas Tille <tille at debian.org>
Date:   Tue Aug 22 09:54:21 2017 +0200

    Updated version 1.0 from 'upstream/1.0'
    
    with Debian dir e14867a395c36fd03c740737f98ab5c185586db2

 CMakeLists.txt          |  67 ++--
 CONTRIBUTORS            |  12 +-
 LICENSE                 |   2 +-
 README.md               |  80 +++--
 lib/alignmentSettings.h | 773 ++++++++++++++++++++++++++++++++++++++++++
 lib/alnread.cpp         | 874 +++++++++++++++++++++++++++++++++++-------------
 lib/alnread.h           |  91 +++--
 lib/alnstream.cpp       | 675 ++++++++++++++++++++++---------------
 lib/alnstream.h         |  39 ++-
 lib/argument_parser.cpp | 778 +++++++++++++++++++++++++++++++-----------
 lib/argument_parser.h   | 481 +++++++++++++++++++++++++-
 lib/config.h.in         |   7 -
 lib/definitions.h       | 378 +++++++++++++++------
 lib/global_variables.h  |   7 +
 lib/headers.h           |   9 +-
 lib/kindex.cpp          | 263 ++++++++-------
 lib/kindex.h            |  36 +-
 lib/parallel.cpp        | 183 +++++-----
 lib/parallel.h          |  80 +++--
 lib/tools.cpp           | 296 ++++++++--------
 lib/tools.h             | 161 +++++++--
 lib/tools_static.cpp    | 181 ++++++++++
 lib/tools_static.h      | 171 ++++++++++
 tools/build_index.cpp   | 147 +++-----
 tools/hilive.cpp        | 265 +++++++++------
 tools/hilive_out.cpp    |  66 ++++
 26 files changed, 4518 insertions(+), 1604 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/hilive.git