[med-svn] [roary] 02/03: Merge tag 'upstream/3.9.1+dfsg'

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository roary.

commit 5bad461be7461ec74c9253e45906251535e7f01b
Merge: 939ddea c6fdb3c
Author: Sascha Steinbiss <satta at debian.org>
Date:   Tue Aug 22 15:54:17 2017 +0200

    Merge tag 'upstream/3.9.1+dfsg'
    
    Upstream version 3.9.1+dfsg

 dist.ini                                           |   2 +-
 lib/Bio/Roary.pm                                   |   2 +
 lib/Bio/Roary/CommandLine/Roary.pm                 |  10 +-
 lib/Bio/Roary/CommandLine/RoaryCoreAlignment.pm    |   9 +-
 lib/Bio/Roary/CommandLine/RoaryPostAnalysis.pm     |   7 +-
 .../Roary/External/GeneAlignmentFromNucleotides.pm |   2 +
 lib/Bio/Roary/External/PostAnalysis.pm             |   5 +
 lib/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm   | 227 ++++++++++-----------
 lib/Bio/Roary/MergeMultifastaAlignments.pm         |   2 +-
 t/Bio/Roary/ExtractCoreGenesFromSpreadsheet.t      |  67 ++++--
 10 files changed, 194 insertions(+), 139 deletions(-)

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