[med-svn] [theseus] branch master created (now cbd4101)
Andreas Tille
tille at debian.org
Thu Aug 24 13:21:47 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository theseus.
at cbd4101 Updated version 3.3.0 from 'upstream/3.3.0'
This branch includes the following new commits:
new 0e67b1d Creating trunk directory
new cb26def [svn-inject] Applying Debian modifications to trunk
new c4df377 Correction of a minor formatting bug.
new 1aba1f6 Clean target now works. Hyphen issues in manpages resolved.
new 25399c8 makefile patched before clean target
new c200e57 Upstream has carried out various changes at my request, so we now have a working watch file, and a couple of patches are no longer needed. The get-orig-target fetches the auxilliary theseus_align script into debian/. Version is now 1.3.9.
new d429596 abstracts removed from citation.bib, due to copyright issues
new 07e371a README.Debian file added, explaining the peculiarity of the get-orig-source target. The theseus_align.1 manpage has been expanded, and the getexamples script updated.
new bfd65d9 Typos and restructuring some paragraphs
new 326500a Fixed spelling mistakes in README.Debian
new 01df4ff Theseus FTBFS on archs armel and lpia because libatlas-base-dev is not available on those platforms. Use liblapack3gf instead on those.
new 010e13e Fix FTBFS on certain platforms that lack the Atlas libraries by using lapack-dev in Build-Depends. This will pull in Atlas on the relevant platforms, otherwise not.
new 3095aed Trying to prepare new upstream version (closes #534630) but upstream is unclear about latest version (Website says 1.4.3 is latest, tgz is named 1.4.0 as well as error.h contains this version string)
new 5036261 Latest upstream, fixed e-mail of upstream
new 98210e6 Added libtool Build-Depends, bumped Standards-Version, but the package does NOT compile because of gcc options -arch (and others) as well as libtool option -o. Needs further investigation!
new 2ab494a Large chunk of changes concerning: Switch to quilt, use short debhelper 7 debian/rules file, use debian/{docs,manpages,examples}, do not tweak upstream tarball, added missing suggests
new 0242e5c Fix library building and compilation options; add README.source to mention quilt; some lintian issues
new 7157fa6 Make sure thesaus_align script will be installed properly; Remove outdated parapgraph from README.Debian
new e8b14c1 Mention the fix which closes #542879 in changelog
new 023ea21 Fixed broken patch
new d7d1523 Start working on new upstream version of theseus
new fce8cdf Adapt patch to new upstream version
new 767cedd Adapt patches to new upstream version; Make sure muscle instead of non-free clustalw will be used as aligner and adjust dependency of muscle accordingly; source format 3
new 532bb9c Packaging for new upstream version; UNRELEASED because one of the examples segfaults
new 174e5c2 New upstream version, removed several patches which are either applied upstream or non-functional (break the build - the latter might harm performance, thus further optimisation should be considered)
new ee74ace New upstream version
new ce5352d Fixed Vcs fields, Standards-Version 3.9.3
new aa83628 Do not mention quilt explicitely which is not needed with source version 3.0 (quilt)
new 293fa62 Remove explicite quilt call in debian/rules
new a7695fe Create debian/upstream files from citation.bib; attention: here we now have another example for multiple references - just testing hereby how this works out
new e5b7652 Debhelper 9 to enable hardening; Hardening requires code patches which is NOT YET FINISHED (so it does not build as is)
new 3fa821e Some more patches removing assigned but not used variables; does not yet build!
new 638ba15 Does compile with hardening flags but linker problem remains
new afc5428 Prevent trying to link with Apple specific linker option
new 623bf7f Enable linking pthread
new 0473524 DEP5 copyright
new 14cd025 Upload to unstable
new 3e051ce Fix debian/upstream syntax
new e4e1567 Fixed cut-n-pasto
new 38f89c9 unique punctuation in authors field
new 1dc86b3 Apply patch by Simon Ruderich to really build with hardening flags and upload to unstable
new 4fb8d67 Fix typo - thanks to Robert Campbell <robert.campbell at queensu.ca> for pointing this up
new 6321510 Remove duplicated citation information
new da27d30 Close the according bug number
new 6acadbd New upstream version (most patches applied)
new b54ebd5 Drop debian/docs which had the only purpose to install the removed citation.bib file
new 40a7941 Upload to experimental
new e7afe9b New upstream version including needed patches
new 655ecde cme fix dpkg-control
new 120954a xz compression; upload to unstable
new ab017f5 Move debian/upstream to debian/upstream/metadata
new 2d774dc New upstream version; cme fix dpkg-control
new 5bf09fd Adapt patches to new upstream version
new d2564ec debian/README.source: removed since redundant
new 155200c Upload to unstable
new ca71673 New upstream version
new 6d7bc24 Fix PATHes in theseus_align
new b358eee Split examples into separate binary package; update debian/copyright
new 0278a7a New upstream version, add missing license statement
new 04d9171 New upstream version
new 4de1018 fix package split issue
new 80295c4 Fix package split issue finally
new 89e5fe7 Enable building arch independent packages separately
new ae80fd8 Add autopkgtest and upload to unstable
new 1a5e6f7 * Depends: muscle instead of Suggests since its usage in test suite seems to make this sensible. * cme fix dpkg-control * Remove Morten Kjeldgaard from uploaders who did not committed for 8 years * Better hardening
new 34df5db New upstream version 3.3.0
new cbd4101 Updated version 3.3.0 from 'upstream/3.3.0'
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