[med-svn] [flexbar] branch upstream updated (dc67803 -> b166ffc)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository flexbar.

      from  dc67803   New upstream version 3.0.0
       new  b166ffc   New upstream version 3.0.3

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt     |   2 +-
 README.md          |  10 +++--
 src/CMakeLists.txt |  17 +++----
 src/Flexbar.cpp    |   6 +--
 src/FlexbarTypes.h |  38 ++++++++--------
 src/Options.h      |   5 +++
 src/PairedAlign.h  | 130 +++++++++++++++++++++++++++++------------------------
 src/PairedInput.h  |  75 +++++++++++++++++--------------
 src/PairedOutput.h |   8 ++--
 src/SeqAlign.h     |   5 ++-
 src/SeqAlignAlgo.h |   4 +-
 11 files changed, 161 insertions(+), 139 deletions(-)

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