[med-svn] [acacia] 06/09: Confirmed to work with libcolt-free-java

[Andreas Tille]

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tille pushed a commit to branch master
in repository acacia.

commit 80d75e88262d3241389d9560fa27468c588dcdb7
Author: Tim Booth <tbooth at ceh.ac.uk>
Date:   Thu Apr 9 15:51:02 2015 +0000

    Confirmed to work with libcolt-free-java
---
 debian/changelog | 12 ++++++++++++
 debian/control   |  7 ++++++-
 debian/watch     |  5 +++--
 3 files changed, 21 insertions(+), 3 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 4b68c7c..092208f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,15 @@
+acacia (1.53-0biolinux2) trusty; urgency=medium
+
+  * Version bump to force rebuild against libcolt-free-java
+
+ -- Tim Booth <tbooth at ceh.ac.uk>  Thu, 09 Apr 2015 15:12:34 +0100
+
+acacia (1.53-0biolinux1.1) trusty; urgency=low
+
+  * Rebuild for trusty
+
+ -- Tim Booth <tbooth at ceh.ac.uk>  Tue, 03 Jun 2014 12:03:22 +0100
+
 acacia (1.53-0biolinux1) precise; urgency=low
 
   * Initial release for Bio-Linux.
diff --git a/debian/control b/debian/control
index b36dc44..758cb22 100644
--- a/debian/control
+++ b/debian/control
@@ -11,7 +11,8 @@ Build-Depends: debhelper (>= 9),
                libbiojava1.7-java,
                libhac-java,
                libcommons-cli-java,
-               libcommons-math3-java
+               libcommons-math3-java,
+               libcolt-free-java
 Standards-Version: 3.9.5
 Homepage: http://sourceforge.net/projects/acaciaerrorcorr/
 
@@ -33,3 +34,7 @@ Description: Error-corrector for pyrosequenced amplicon reads.
  regions where there are more `errors' than expected by chance - these imply
  that the differences are due to population differences rather than
  error-induced polymorphisms.
+ .
+ Nat Methods. 2012 Apr 27;9(5):425-6. doi: 10.1038/nmeth.1990.
+ Fast, accurate error-correction of amplicon pyrosequences using Acacia.
+ Bragg L, Stone G, Imelfort M, Hugenholtz P, Tyson GW.
diff --git a/debian/watch b/debian/watch
index a11cf8a..10a2e7e 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,4 +1,5 @@
 version=3
 # There is a source dump on SF.net but actually the latest code is on GitHub
-# https://github.com/LBragg/Acacia
-http://sf.net/acaciaerrorcorr/Acacia-([0-9.]+)_src.(?:tar.gz|.tar.bz2|.tgz)
+#http://sf.net/acaciaerrorcorr/Acacia-([0-9.]+)_src.(?:tar.gz|.tar.bz2|.tgz)
+
+https://github.com/LBragg/Acacia/releases .*/archive/v?([0-9.]+).tar.gz

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