[med-svn] [phylophlan] 09/10: Update upstream source from tag 'upstream/1.1.0'

[Andreas Tille]

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tille pushed a commit to branch master
in repository phylophlan.

commit ddb20244c56eab3dc219250ad730f5e2c3ecb921
Merge: d9955d9 b90d3c8
Author: Andreas Tille <tille at debian.org>
Date:   Fri Dec 1 15:45:18 2017 +0100

    Update upstream source from tag 'upstream/1.1.0'
    
    Update to upstream version '1.1.0'
    with Debian dir a6ed51d31e9bf19faf8fc8f557c430f4c070c85c

 .hg_archival.txt                                   |     4 +
 .hgsub                                             |     2 +
 .hgsubstate                                        |     2 +
 .hgtags                                            |     2 +
 data/.folder                                       |     0
 data/ppa.seeds.40.faa.tar.bz2                      |   Bin 0 -> 7276100 bytes
 data/ppa.seeds.faa.tar.bz2                         |   Bin 0 -> 70748674 bytes
 data/ppaalns/ppa.aln.tar.bz2                       |   Bin 0 -> 186065291 bytes
 data/ppafull.aln.faa.tar.bz2                       |   Bin 0 -> 5152335 bytes
 data/ppafull.orgs2prots.txt.tar.bz2                |   Bin 0 -> 18030685 bytes
 data/ppafull.tax.txt.tar.bz2                       |   Bin 0 -> 41564 bytes
 data/ppafull.up2prots.txt.tar.bz2                  |   Bin 0 -> 3451677 bytes
 data/ppafull.xml.tar.bz2                           |   Bin 0 -> 37529 bytes
 input/.folder                                      |     0
 .../C_accolens_ATCC49725.faa                       | 20182 ++++++
 .../C_accolens_ATCC49726.faa                       | 20043 ++++++
 .../C_ammoniagenes_DSM20306.faa                    | 23208 +++++++
 input/example_corynebacteria/C_amycolatum_SK46.faa | 19490 ++++++
 .../C_aurimucosum_ATCC700975.faa                   | 22546 +++++++
 .../C_diphtheriae_NCTC13129.faa                    | 20548 ++++++
 .../example_corynebacteria/C_efficiens_YS314A.faa  | 26981 ++++++++
 .../example_corynebacteria/C_efficiens_YS314B.faa  | 25892 ++++++++
 .../C_genitalium_ATCC33030.faa                     | 19710 ++++++
 .../C_glucuronolyticum_ATCC51866.faa               | 23056 +++++++
 .../C_glucuronolyticum_ATCC51867.faa               | 22498 +++++++
 .../C_glutamicum_ATCC13032B.faa                    | 26748 ++++++++
 .../C_glutamicum_ATCC13032K.faa                    | 26475 ++++++++
 input/example_corynebacteria/C_glutamicum_R.faa    | 26942 ++++++++
 .../C_jeikeium_ATCC43734.faa                       | 19966 ++++++
 input/example_corynebacteria/C_jeikeium_K411.faa   | 20012 ++++++
 .../C_kroppenstedtii_DSM44385.faa                  | 19154 ++++++
 .../C_lipophiloflavum_DSM44291.faa                 | 19823 ++++++
 .../C_matruchotii_ATCC14266.faa                    | 22929 +++++++
 .../C_matruchotii_ATCC33806.faa                    | 25283 ++++++++
 .../C_pseudogenitalium_ATCC33035.faa               | 21875 +++++++
 .../C_pseudotuberculosis_1002.faa                  | 18310 ++++++
 .../C_pseudotuberculosis_C231.faa                  | 18333 ++++++
 .../C_pseudotuberculosis_FRC41.faa                 | 18904 ++++++
 .../C_pseudotuberculosis_I19.faa                   | 18396 ++++++
 .../C_resistens_DSM45100.faa                       | 20597 ++++++
 .../example_corynebacteria/C_striatum_ATCC6940.faa | 22892 +++++++
 .../C_tuberculostearicum_SK141.faa                 | 19613 ++++++
 .../C_urealyticum_DSM7109.faa                      | 19159 ++++++
 .../C_variabile_DSM44702.faa                       | 27507 ++++++++
 .../Streptomyces_outgroup1.faa                     | 52839 ++++++++++++++++
 .../Streptomyces_outgroup2.faa                     | 62461 +++++++++++++++++++
 .../Lactobacillus_rhamnosus_K_ATCC_8530.faa        | 23730 +++++++
 .../Lactobacillus_rhamnosus_LRHMDP3.faa            | 23747 +++++++
 .../Sulfolobus_acidocaldarius_N8.faa               | 12296 ++++
 license.txt                                        |     8 +
 output/.folder                                     |     0
 phylophlan.py                                      |  1095 +
 taxcuration/pyphlan.py                             |   714 +
 taxcuration/taxcuration.py                         |   994 +
 taxcuration/tree_reroot.py                         |    45 +
 55 files changed, 835011 insertions(+)

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